RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 BRAFP15056 766 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 TYK2P29597 1187 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 ROR1Q01973 937 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 COX10Q12887 443 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 MTHFD1LQ6UB35 978 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 TTLL1O95922 423 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 PHKA1P46020 1223 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 PARD6BQ9BYG5 372 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 SLC16A1P53985 500 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 PCDHA4Q9UN74 947 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 EVPLLA8MZ36 301 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 TBXAS1P24557 533 aaPredicted RBP14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 KCNQ4P56696 695 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 TMC5Q6UXY8 1006 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 DPP10Q8N608 796 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 OR6P1Q8NGX9 317 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 SNF8Q96H20 258 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 TUBGCP4Q9UGJ1 667 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 DOLKQ9UPQ8 538 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 K7ERI5 159 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 MLH1P40692 756 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 SERPINH1P50454 418 aaKnown RBP14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 NUP107P57740 925 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 MAGOHP61326 146 aaKnown RBP14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 PKN2Q16513 984 aaKnown RBP14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 RABGAP1LQ5R372 815 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 KRT74Q7RTS7 529 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 NUP93Q8N1F7 819 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 LRRC47Q8N1G4 583 aaKnown RBP14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 C17orf80Q9BSJ5 609 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 MAN1C1Q9NR34 630 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 PALD1Q9ULE6 856 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 TRPM2O94759 1503 aa14.71□□□□□ -0.05
CCDC88A-201ENST00000263630 IQCA1LA6NCM1 817 aa14.71□□□□□ -0.06
CCDC88A-201ENST00000263630 PPP3CCP48454 512 aa14.71□□□□□ -0.06
CCDC88A-201ENST00000263630 ZNF568Q3ZCX4 644 aa14.71□□□□□ -0.06
CCDC88A-201ENST00000263630 SRLQ86TD4 932 aa14.71□□□□□ -0.06
CCDC88A-201ENST00000263630 KRT73Q86Y46 540 aa14.71□□□□□ -0.06
CCDC88A-201ENST00000263630 OR6B3Q8NGW1 331 aa14.71□□□□□ -0.06
CCDC88A-201ENST00000263630 BFARQ9NZS9 450 aa14.71□□□□□ -0.06
CCDC88A-201ENST00000263630 CCT8P50990 548 aa14.71□□□□□ -0.06
CCDC88A-201ENST00000263630 MDM1Q8TC05 714 aa14.71□□□□□ -0.06
CCDC88A-201ENST00000263630 SGSM1Q2NKQ1 1148 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 EPC1Q9H2F5 836 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 SNPHO15079 494 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 KCNA3P22001 575 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 CCDC17Q96LX7 622 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 PIDD1Q9HB75 910 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 MRPL39Q9NYK5 338 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 COPG2Q9UBF2 871 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.7□□□□□ -0.066e-7■■□□□ 12.4
CCDC88A-201ENST00000263630 ZNF667Q5HYK9 610 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 OSBPL6Q9BZF3 934 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 EPN3Q9H201 632 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 ALBP02768 609 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 SERPIND1P05546 499 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 CCT7Q99832 543 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 RWDD3Q9Y3V2 267 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 STX7O15400 261 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 ATP6V1C1P21283 382 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 CDKL3Q8IVW4 592 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 CASP10Q92851 521 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 THOC1Q96FV9 657 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 MSTO1Q9BUK6 570 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 NMRK1Q9NWW6 199 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 CLASP2O75122 1294 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 MYBL1P10243 752 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 GCKRQ14397 625 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 RNASE11Q8TAA1 199 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 KDM5AP29375 1690 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 A0A1W2PQ27 194 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 A0A1W2PQ64 194 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 A0A1W2PQD8 194 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 HUS1O60921 280 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 ALDH1A2O94788 518 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 HOXB7P09629 217 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 PDAP1Q13442 181 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 SETD3Q86TU7 594 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 CABLES1Q8TDN4 633 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 SYCP2Q9BX26 1530 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 DNALI1O14645 258 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 ECDO95905 644 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 PASD1Q8IV76 773 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 INTS13Q9NVM9 706 aa14.7□□□□□ -0.06
CCDC88A-201ENST00000263630 MTFR1Q15390 333 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 ADGRL1O94910 1474 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 GRID2IPA4D2P6 1211 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 CTTNQ14247 550 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 YAF2Q8IY57 180 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 AKAP5P24588 427 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 EIF4A3P38919 411 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 C1DQ13901 141 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 EFHC2Q5JST6 749 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 C6orf10Q5SRN2 563 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 MAPKAPK2P49137 400 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 FAM173BQ6P4H8 233 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 STX12Q86Y82 276 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 DHX36Q9H2U1 1008 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 IP6K2Q9UHH9 426 aa14.69□□□□□ -0.06
CCDC88A-201ENST00000263630 SERPINB3P29508 390 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms