RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 RSAD1Q9HA92 442 aa15.19■□□□□ 0.02
TRIM28-211ENST00000597968 ANKEF1Q9NU02 776 aa15.19■□□□□ 0.02
TRIM28-211ENST00000597968 DPP7Q9UHL4 492 aa15.19■□□□□ 0.02
TRIM28-211ENST00000597968 ZMYM2Q9UBW7 1377 aa15.19■□□□□ 0.02
TRIM28-211ENST00000597968 ERLIN2O94905 339 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 SLITRK3O94933 977 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 CTDNEP1O95476 244 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 HOXA11P31270 313 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-211ENST00000597968 AK2P54819 239 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 XKR9Q5GH70 373 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 KIAA1841Q6NSI8 718 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 NOTUMQ6P988 496 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 POTEDQ86YR6 584 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 KSR1Q8IVT5 923 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 GPR65Q8IYL9 337 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 HACE1Q8IYU2 909 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 FBXL6Q8N531 539 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 TNFRSF25Q93038 417 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 GTF3C6Q969F1 213 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 HSD17B14Q9BPX1 270 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 EMILIN2Q9BXX0 1053 aa15.18■□□□□ 0.02
TRIM28-211ENST00000597968 WRAP73Q9P2S5 460 aaPredicted RBP15.18■□□□□ 0.02
TRIM28-211ENST00000597968 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-211ENST00000597968 SRGAP2CP0DJJ0 459 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 PTPN5P54829 565 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 PTENP60484 403 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 RBM10P98175 930 aaKnown RBP15.17■□□□□ 0.02
TRIM28-211ENST00000597968 NHLH1Q02575 133 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 ORC2Q13416 577 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-211ENST00000597968 TRIM29Q14134 588 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 ATAT1Q5SQI0 421 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 NCAPH2Q6IBW4 605 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 LLGL2Q6P1M3 1020 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 ELMSAN1Q6PJG2 1045 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 CYP26C1Q6V0L0 522 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 AGMOQ6ZNB7 445 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 RNF149Q8NC42 400 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 OXER1Q8TDS5 423 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 DYDC2Q96IM9 177 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 FAM193BQ96PV7 902 aaPredicted RBP15.17■□□□□ 0.02
TRIM28-211ENST00000597968 RHOBTB2Q9BYZ6 727 aa15.17■□□□□ 0.02
TRIM28-211ENST00000597968 NT5C1B-RDH14C9J2C7 533 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 FDPSP14324 419 aaKnown RBP15.16■□□□□ 0.02
TRIM28-211ENST00000597968 CALCRLQ16602 461 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 C15orf39Q6ZRI6 1047 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 TPH2Q8IWU9 490 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 ZDHHC14Q8IZN3 488 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 LPPQ93052 612 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 TMEM143Q96AN5 459 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 ASIC4Q96FT7 647 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 EIF2AK1Q9BQI3 630 aaKnown RBP15.16■□□□□ 0.02
TRIM28-211ENST00000597968 SFXN1Q9H9B4 322 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 RGL1Q9NZL6 768 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 SORCS3Q9UPU3 1222 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 INPP5FQ9Y2H2 1132 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 FAN1Q9Y2M0 1017 aa15.16■□□□□ 0.02
TRIM28-211ENST00000597968 NEMFO60524 1076 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 NR1I2O75469 434 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 ITGA4P13612 1032 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 SLC11A1P49279 550 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 NR5A1Q13285 461 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 MTMR3Q13615 1198 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 PTPN14Q15678 1187 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 ME3Q16798 604 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 UBXN11Q5T124 520 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 TMEM173Q86WV6 379 aaPredicted RBP15.15■□□□□ 0.02
TRIM28-211ENST00000597968 ZNF579Q8NAF0 562 aaKnown RBP15.15■□□□□ 0.02
TRIM28-211ENST00000597968 SLC22A17Q8WUG5 538 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 CCDC43Q96MW1 224 aaKnown RBP15.15■□□□□ 0.02
TRIM28-211ENST00000597968 CSRNP2Q9H175 543 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 TTC12Q9H892 705 aaPredicted RBP15.15■□□□□ 0.02
TRIM28-211ENST00000597968 MINDY3Q9H8M7 445 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 MRPL17Q9NRX2 175 aaKnown RBP15.15■□□□□ 0.02
TRIM28-211ENST00000597968 GIT1Q9Y2X7 761 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 MUC6Q6W4X9 2439 aa15.15■□□□□ 0.02
TRIM28-211ENST00000597968 MEIS3P2A8K0S8 358 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 TSPAN1O60635 241 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 LILRB3O75022 631 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 SOD2P04179 222 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 MUTP22033 750 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 CA8P35219 290 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 ARL2P36404 184 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 RARRES1P49788 294 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 CYP4A11Q02928 519 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 CTTNQ14247 550 aaKnown RBP15.14■□□□□ 0.01
TRIM28-211ENST00000597968 EARS2Q5JPH6 523 aaKnown RBP15.14■□□□□ 0.01
TRIM28-211ENST00000597968 ZBTB33Q86T24 672 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 CABP7Q86V35 215 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 ZNF280BQ86YH2 543 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 DIS3L2Q8IYB7 885 aaKnown RBP15.14■□□□□ 0.01
TRIM28-211ENST00000597968 NSUN7Q8NE18 718 aaKnown RBP15.14■□□□□ 0.01
TRIM28-211ENST00000597968 CMASQ8NFW8 434 aaPredicted RBP15.14■□□□□ 0.01
TRIM28-211ENST00000597968 HDAC7Q8WUI4 952 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 PRIMPOLQ96LW4 560 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 MTMR9Q96QG7 549 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 POMKQ9H5K3 350 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 XPNPEP1Q9NQW7 623 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 GJB4Q9NTQ9 266 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 DNAJB4Q9UDY4 337 aa15.14■□□□□ 0.01
TRIM28-211ENST00000597968 IPPQ9Y573 584 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms