RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 TCP11Q8WWU5 503 aa19.74■□□□□ 0.75
HDDC3-205ENST00000559898 BSNDQ8WZ55 320 aa19.74■□□□□ 0.75
HDDC3-205ENST00000559898 FOXP1Q9H334 677 aaPredicted RBP19.74■□□□□ 0.75
HDDC3-205ENST00000559898 USP15Q9Y4E8 981 aaPredicted RBP19.74■□□□□ 0.75
HDDC3-205ENST00000559898 POMCP01189 267 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 EDN1P05305 212 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 GALTP07902 379 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 OR52Z1P0C646 297 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 COASYQ13057 564 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 CSPP1Q1MSJ5 1256 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 KANK3Q6NY19 840 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 SYCE2Q6PIF2 218 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 TMC7Q7Z402 723 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 NOSTRINQ8IVI9 506 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 SH2B1Q9NRF2 756 aaPredicted RBP19.73■□□□□ 0.75
HDDC3-205ENST00000559898 PCDHB6Q9Y5E3 794 aa19.73■□□□□ 0.75
HDDC3-205ENST00000559898 C2orf71A6NGG8 1288 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 F8W810 466 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 INO80B-WBP1J3KQ70 363 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 ASAP2O43150 1006 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 EIF5BO60841 1220 aaKnown RBP19.72■□□□□ 0.75
HDDC3-205ENST00000559898 DGAT1O75907 488 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 IL17AQ16552 155 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 GLB1LQ6UWU2 654 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 FAM184AQ8NB25 1140 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 PPP2R3CQ969Q6 453 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 MRPL9Q9BYD2 267 aaKnown RBP19.72■□□□□ 0.75
HDDC3-205ENST00000559898 S1PR5Q9H228 398 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 IPPQ9Y573 584 aa19.72■□□□□ 0.75
HDDC3-205ENST00000559898 TDRD15B5MCY1 1934 aaKnown RBP19.72■□□□□ 0.75
HDDC3-205ENST00000559898 TRIOO75962 3097 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 PP2D1A8MPX8 630 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 GAS2O43903 313 aaKnown RBP19.71■□□□□ 0.75
HDDC3-205ENST00000559898 ARF4P18085 180 aaPredicted RBP19.71■□□□□ 0.75
HDDC3-205ENST00000559898 PPM1AP35813 382 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 RAB27AP51159 221 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 HMGN5P82970 282 aaKnown RBP19.71■□□□□ 0.75
HDDC3-205ENST00000559898 IFNLR1Q8IU57 520 aaPredicted RBP19.71■□□□□ 0.75
HDDC3-205ENST00000559898 EXOC8Q8IYI6 725 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 VPS52Q8N1B4 723 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 IGSF21Q96ID5 467 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 ZFP42Q96MM3 310 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 POLR3CQ9BUI4 534 aaPredicted RBP19.71■□□□□ 0.75
HDDC3-205ENST00000559898 APOL6Q9BWW8 343 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 C1QTNF1Q9BXJ1 281 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 ZBP1Q9H171 429 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 CXCL16Q9H2A7 254 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 NXF3Q9H4D5 531 aaKnown RBP19.71■□□□□ 0.75
HDDC3-205ENST00000559898 RSAD1Q9HA92 442 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 TUFT1Q9NNX1 390 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 PRKAG3Q9UGI9 489 aa19.71■□□□□ 0.75
HDDC3-205ENST00000559898 PUF60Q9UHX1 559 aaKnown RBP19.71■□□□□ 0.75
HDDC3-205ENST00000559898 CLASP2O75122 1294 aaKnown RBP19.7■□□□□ 0.74
HDDC3-205ENST00000559898 CXCL14O95715 111 aa19.7■□□□□ 0.74
HDDC3-205ENST00000559898 NCLP19338 710 aaKnown RBP19.7■□□□□ 0.74
HDDC3-205ENST00000559898 U2AF2P26368 475 aaKnown RBP eCLIP19.7■□□□□ 0.74
HDDC3-205ENST00000559898 CA8P35219 290 aa19.7■□□□□ 0.74
HDDC3-205ENST00000559898 ALDH7A1P49419 539 aaKnown RBP19.7■□□□□ 0.74
HDDC3-205ENST00000559898 KRT17Q04695 432 aa19.7■□□□□ 0.74
HDDC3-205ENST00000559898 MXD4Q14582 209 aaPredicted RBP19.7■□□□□ 0.74
HDDC3-205ENST00000559898 ANKRD54Q6NXT1 300 aa19.7■□□□□ 0.74
HDDC3-205ENST00000559898 MRPL43Q8N983 215 aaKnown RBP19.7■□□□□ 0.74
HDDC3-205ENST00000559898 CACNG4Q9UBN1 327 aa19.7■□□□□ 0.74
HDDC3-205ENST00000559898 MUTYHQ9UIF7 546 aa19.7■□□□□ 0.74
HDDC3-205ENST00000559898 ERLIN2O94905 339 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 WEE2P0C1S8 567 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 SKIP12755 728 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 AKAP5P24588 427 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 CDC25AP30304 524 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 RNASELQ05823 741 aaKnown RBP19.69■□□□□ 0.74
HDDC3-205ENST00000559898 RABEP1Q15276 862 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 TMEM31Q5JXX7 168 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 PDE12Q6L8Q7 609 aaKnown RBP19.69■□□□□ 0.74
HDDC3-205ENST00000559898 TMEM184AQ6ZMB5 413 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 TAS1R1Q7RTX1 841 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 RNF135Q8IUD6 432 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 C12orf76Q8N812 135 aaPredicted RBP19.69■□□□□ 0.74
HDDC3-205ENST00000559898 SUSD6Q92537 303 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 PGBD4Q96DM1 585 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 TMEM169Q96HH4 297 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 TMX3Q96JJ7 454 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 GAD1Q99259 594 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 CSRNP2Q9H175 543 aa19.69■□□□□ 0.74
HDDC3-205ENST00000559898 NGRNQ9NPE2 291 aaKnown RBP19.69■□□□□ 0.74
HDDC3-205ENST00000559898 LRRIQ4A6NIV6 560 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 GPR37L1O60883 481 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 NPTXRO95502 500 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 SSBP05455 408 aaKnown RBP eCLIP19.68■□□□□ 0.74
HDDC3-205ENST00000559898 ITGA4P13612 1032 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 SP100P23497 879 aaPredicted RBP19.68■□□□□ 0.74
HDDC3-205ENST00000559898 RPA1P27694 616 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 MLH1P40692 756 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 SCNN1GP51170 649 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 PTGDRQ13258 359 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 GNL2Q13823 731 aaKnown RBP19.68■□□□□ 0.74
HDDC3-205ENST00000559898 SMC1AQ14683 1233 aaKnown RBP19.68■□□□□ 0.74
HDDC3-205ENST00000559898 PADI6Q6TGC4 694 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 RABGGTAQ92696 567 aa19.68■□□□□ 0.74
HDDC3-205ENST00000559898 CCDC43Q96MW1 224 aaKnown RBP19.68■□□□□ 0.74
HDDC3-205ENST00000559898 CDCA3Q99618 268 aaPredicted RBP19.68■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms