RNA–Protein interactions for RNA: ENST00000551549.1

GCN1-208, Transcript of GCN1, eIF2 alpha kinase activator homolog, human

TSL 2

Gene GCN1, Length 258 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GCN1-208	ENST00000551549	NBR1	Q14596	966 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	MAEA	Q7L5Y9	396 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	CATSPER3	Q86XQ3	398 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	NOSTRIN	Q8IVI9	506 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	MRPL43	Q8N983	215 aa	Known RBP	10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	FAM184A	Q8NB25	1140 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	SMG8	Q8ND04	991 aa	Known RBP	10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	AUTS2	Q8WXX7	1259 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	PGBD4	Q96DM1	585 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	CPB2	Q96IY4	423 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	CCDC43	Q96MW1	224 aa	Known RBP	10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	EIF2A	Q9BY44	585 aa	Known RBP	10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	RNF39	Q9H2S5	420 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	GPRC5C	Q9NQ84	441 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	DNAJB4	Q9UDY4	337 aa		10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	USP15	Q9Y4E8	981 aa	Predicted RBP	10.83	□□□□□ -0.68
GCN1-208	ENST00000551549	MYO15A	Q9UKN7	3530 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	MUC6	Q6W4X9	2439 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	C2orf71	A6NGG8	1288 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	INO80B-WBP1	J3KQ70	363 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	DCX	O43602	365 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	USO1	O60763	962 aa	Known RBP	10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	GPR37L1	O60883	481 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	DDHD2	O94830	711 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	ERLIN2	O94905	339 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	CXCL14	O95715	111 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	POMC	P01189	267 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	OR52Z1	P0C646	297 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	XRCC6	P12956	609 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	ALAD	P13716	330 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	NCL	P19338	710 aa	Known RBP	10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	SLC11A1	P49279	550 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	HMGN5	P82970	282 aa	Known RBP	10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	TFDP1	Q14186	410 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	SMC1A	Q14683	1233 aa	Known RBP	10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	AMHR2	Q16671	573 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	TTC38	Q5R3I4	469 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	SYCE2	Q6PIF2	218 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	POTEG	Q6S5H5	508 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	TMEM184A	Q6ZMB5	413 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	VPS52	Q8N1B4	723 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	C4orf32	Q8N8J7	132 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	URGCP	Q8TCY9	931 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	TMEM169	Q96HH4	297 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	IGSF21	Q96ID5	467 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	POLR3C	Q9BUI4	534 aa	Predicted RBP	10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	APOL5	Q9BWW9	433 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	VN1R3	Q9BXE9	311 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	POLR3F	Q9H1D9	316 aa	Predicted RBP	10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	S1PR5	Q9H228	398 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	RSAD1	Q9HA92	442 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	HES2	Q9Y543	173 aa		10.82	□□□□□ -0.68
GCN1-208	ENST00000551549	B4GALT5	O43286	388 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	CLASP2	O75122	1294 aa	Known RBP	10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	ITGA4	P13612	1032 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	CA8	P35219	290 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	TOB1	P50616	345 aa	Predicted RBP	10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	POU5F1B	Q06416	359 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	GNL2	Q13823	731 aa	Known RBP	10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	ECM1	Q16610	540 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	ANKRD54	Q6NXT1	300 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	NOTUM	Q6P988	496 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	RNF135	Q8IUD6	432 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	RSPH1	Q8WYR4	309 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	SUSD6	Q92537	303 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	NACC1	Q96RE7	527 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	POP1	Q99575	1024 aa	Known RBP	10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	ZBP1	Q9H171	429 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	TUFT1	Q9NNX1	390 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	MUTYH	Q9UIF7	546 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	DBR1	Q9UK59	544 aa	Known RBP	10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	IPP	Q9Y573	584 aa		10.81	□□□□□ -0.68
GCN1-208	ENST00000551549	PIEZO1	Q92508	2521 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	FSD2	A1L4K1	749 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	ARL5C	A6NH57	179 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	LOC730098	B7Z3J9	87 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	SRGAP2B	P0DMP2	458 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	ARF4	P18085	180 aa	Predicted RBP	10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	U2AF2	P26368	475 aa	Known RBP eCLIP	10.8	□□□□□ -0.68	8e-8	■□□□□ 11.3
GCN1-208	ENST00000551549	RPA1	P27694	616 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	AXL	P30530	894 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	TRAPPC10	P48553	1259 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	NCBP1	Q09161	790 aa	Known RBP	10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	ORC2	Q13416	577 aa	Predicted RBP	10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	RABEP1	Q15276	862 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	PCBP1	Q15365	356 aa	Known RBP eCLIP	10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	DDX53	Q86TM3	631 aa	Known RBP	10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	CDR2L	Q86X02	465 aa	Predicted RBP	10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	ERMN	Q8TAM6	284 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	CCDC51	Q96ER9	411 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	RPGRIP1	Q96KN7	1286 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	ZFP42	Q96MM3	310 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	GAD1	Q99259	594 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	APOL6	Q9BWW8	343 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	PHF7	Q9BWX1	381 aa	Predicted RBP	10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	NFKBIZ	Q9BYH8	718 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	CSRNP2	Q9H175	543 aa		10.8	□□□□□ -0.68
GCN1-208	ENST00000551549	POLD4	Q9HCU8	107 aa		10.8	□□□□□ -0.68

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