RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 HOOK3Q86VS8 718 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 PAGE5Q96GU1 130 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 RSRP1Q9BUV0 290 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 ABHD10Q9NUJ1 306 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 DNAJC17Q9NVM6 304 aaKnown RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 EHD2Q9NZN4 543 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 HPSEQ9Y251 543 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 TNKSO95271 1327 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF541Q9H0D2 1346 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 SPATA31C2B4DYI2 1134 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 GDF9O60383 454 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 LMNB1P20700 586 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 EPHB4P54760 987 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 CTSWP56202 376 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 MUM1L1Q5H9M0 696 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 OTUD6AQ7L8S5 288 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 CCDC50Q8IVM0 306 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 DNAJC5GQ8N7S2 189 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 PHC3Q8NDX5 983 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 FERMT2Q96AC1 680 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 CNOT6LQ96LI5 555 aaKnown RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 GSDMAQ96QA5 445 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 TCF12Q99081 682 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 NUP58Q9BVL2 599 aa5.95□□□□□ -1.46
LIMA1-203ENST00000547825 MTRF1LQ9UGC7 380 aaKnown RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 SAP30BPQ9UHR5 308 aaKnown RBP5.95□□□□□ -1.46
LIMA1-203ENST00000547825 H0Y3Z8 333 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TLR3O15455 904 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 BBOX1O75936 387 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 EEF2P13639 858 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 FGFR2P21802 821 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 ALDH1B1P30837 517 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TOB1P50616 345 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 USP14P54578 494 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 PLTPP55058 493 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 SFSWAPQ12872 951 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 NFX1Q12986 1120 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TBX2Q13207 712 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 ARHGAP44Q17R89 818 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 SPRED3Q2MJR0 410 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 GNPTABQ3T906 1256 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 SFMBT2Q5VUG0 894 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TRIM67Q6ZTA4 783 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 MAEAQ7L5Y9 396 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CABP7Q86V35 215 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TBC1D10CQ8IV04 446 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 MB21D2Q8IYB1 491 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TAB3Q8N5C8 712 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TRIML1Q8N9V2 468 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CELF1Q92879 486 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 MS4A14Q96JA4 679 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 ELAC2Q9BQ52 826 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TSEN34Q9BSV6 310 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 LSM14BQ9BX40 385 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TIMMDC1Q9NPL8 285 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 AATFQ9NY61 560 aaKnown RBP eCLIP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 NKIRAS1Q9NYS0 192 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 POLLQ9UGP5 575 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 ASIC3Q9UHC3 531 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 FRMPD3Q5JV73 1810 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 PDE8AO60658 829 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 HIP1RO75146 1068 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 SMIM24O75264 130 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 THBS1P07996 1170 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CALM1P0DP23 149 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CALM2P0DP24 149 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CALM3P0DP25 149 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 MYBL1P10243 752 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 BMP2P12643 396 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CORO7P57737 925 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 APBA1Q02410 837 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 RAB33AQ14088 237 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 ASIC2Q16515 512 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 EARS2Q5JPH6 523 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 NBPF5PQ86XG9 351 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CCDC105Q8IYK2 499 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 OR2W6PQ8NHA6 318 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 U2AF1L4Q8WU68 220 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 KLHL29Q96CT2 875 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 SPDL1Q96EA4 605 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 SEC16BQ96JE7 1060 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CRNKL1Q9BZJ0 848 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TRIM6Q9C030 488 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TOR4AQ9NXH8 423 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 RASAL2Q9UJF2 1139 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 L1RE1Q9UN81 338 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 PTPN22Q9Y2R2 807 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 DUSP10Q9Y6W6 482 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 GLTPD2A6NH11 291 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 A6NNZ2 444 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 SPOPO43791 374 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TBCAO75347 108 aaKnown RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 POLE2P56282 527 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 TUBB8Q3ZCM7 444 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CCDC38Q502W7 563 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 RESP18Q5W5W9 173 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 DENND2CQ68D51 928 aa5.94□□□□□ -1.46
LIMA1-203ENST00000547825 BNC2Q6ZN30 1099 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 CCDC84Q86UT8 332 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-203ENST00000547825 RELL1Q8IUW5 271 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 91.7 ms