RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 SYNJ2BP-COX16A0A087WUM0 186 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 CENPXA8MT69 81 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 UXS1Q8NBZ7 420 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 COX16Q9P0S2 106 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 GINS2Q9Y248 185 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 RNF123Q5XPI4 1314 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 TALDO1P37837 337 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 PDAP1Q13442 181 aaKnown RBP11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 KRT40Q6A162 431 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 PITPNM2Q9BZ72 1349 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 TXKP42681 527 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 ARF5P84085 180 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 SFSWAPQ12872 951 aaKnown RBP11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 SARM1Q6SZW1 724 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 FAM45AQ8TCE6 357 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 E7EWF7 191 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 KPNA4O00629 521 aaPredicted RBP11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 SUCLG2Q96I99 432 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 CYP4F11Q9HBI6 524 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 NFU1Q9UMS0 254 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 IDH3BO43837 385 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 SPOUT1Q5T280 376 aaKnown RBP11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 VPS54Q9P1Q0 977 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 LINC00854A0A1B0GVQ3 168 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 PEX1O43933 1283 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 DYNLT1P63172 113 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 SCRN3Q0VDG4 424 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 UVRAGQ9P2Y5 699 aa11.83□□□□□ -0.52
HDGFL3-201ENST00000299633 TGFBR2P37173 567 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 SERHL2Q9H4I8 314 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 SERHLQ9NQF3 203 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 IARS2Q9NSE4 1012 aaKnown RBP11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 FAM135BQ49AJ0 1406 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 KRT37O76014 449 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 NLRP11P59045 1033 aaKnown RBP11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 DIS3L2Q8IYB7 885 aaKnown RBP11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 ENKURQ8TC29 256 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 MYO1FO00160 1098 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 PPIP5K2O43314 1243 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 IL13P35225 146 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 ALDH18A1P54886 795 aaKnown RBP11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 TTLL7Q6ZT98 887 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 FAM192AQ9GZU8 254 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 EXOSC4Q9NPD3 245 aaKnown RBP11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 INPP5FQ9Y2H2 1132 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 CACNA1DQ01668 2161 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 FLT3P36888 993 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 MAGOHP61326 146 aaKnown RBP11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 NEK10Q6ZWH5 1172 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 DCAF5Q96JK2 942 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 PCDHB4Q9Y5E5 795 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 KPNA7A9QM74 516 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 ATP11CQ8NB49 1132 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 PLEKHA5Q9HAU0 1116 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 CHMP1AQ9HD42 196 aaPredicted RBP11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 MLXIPLQ9NP71 852 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 ANAPC7Q9UJX3 599 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 MYOM2P54296 1465 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 A0A0D9SFI3 127 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 TCP11X1B4DZS4 312 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 CYP2C19P33261 490 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 MYL7Q01449 175 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 RSRC2Q7L4I2 434 aaKnown RBP11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 FAM162AQ96A26 154 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 SAC3D1A6NKF1 404 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 WDR64B1ANS9 1081 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 PGM1P36871 562 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 FAM133AQ8N9E0 248 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 SERTAD1Q9UHV2 236 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 SLFN12LQ6IEE8 588 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 FAM107AO95990 144 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 GPR1P46091 355 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 PDZK1Q5T2W1 519 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 RASA4BC9J798 803 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 RASA4O43374 803 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 TAF5LO75529 589 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 NRG3P56975 720 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 TTC33Q6PID6 262 aaPredicted RBP11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 C17orf50Q8WW18 174 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 CLIC6Q96NY7 704 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 CD248Q9HCU0 757 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 GPHNQ9NQX3 736 aaPredicted RBP11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 SLC12A6Q9UHW9 1150 aa11.82□□□□□ -0.52
HDGFL3-201ENST00000299633 MAP3K19Q56UN5 1328 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 ZNF532Q9HCE3 1301 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 SRGAP2O75044 1071 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 ENO1P06733 434 aaKnown RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 POTEIP0CG38 1075 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 RBL2Q08999 1139 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 LLGL1Q15334 1064 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 PDCD6IPQ8WUM4 868 aaKnown RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 SENP1Q9P0U3 644 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 H7C1D1 291 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 DDX39AO00148 427 aaKnown RBP11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 HSPA13P48723 471 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 LONP2Q86WA8 852 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 VPS39Q96JC1 886 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 CD209Q9NNX6 404 aa11.81□□□□□ -0.52
HDGFL3-201ENST00000299633 C5orf58C9J3I9 102 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms