RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 C1QTNF12Q5T7M4 302 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 DUPD1Q68J44 220 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 FAM133AQ8N9E0 248 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 FAM13CQ8NE31 585 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 WDR66Q8TBY9 1149 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 DDX12PQ92771 950 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 OPTNQ96CV9 577 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 CRAMP1Q96RY5 1269 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 NAP1L4Q99733 375 aaKnown RBP14.11□□□□□ -0.15
NUP54-201ENST00000264883 ERP44Q9BS26 406 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 TMEM109Q9BVC6 243 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 PPP1R12CQ9BZL4 782 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 DNAAF2Q9NVR5 837 aaKnown RBP14.11□□□□□ -0.15
NUP54-201ENST00000264883 PHF24Q9UPV7 400 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 KDM3AQ9Y4C1 1321 aa14.11□□□□□ -0.15
NUP54-201ENST00000264883 NVLO15381 856 aaKnown RBP14.1□□□□□ -0.15
NUP54-201ENST00000264883 ATP5HO75947 161 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 AFPP02771 609 aaKnown RBP14.1□□□□□ -0.15
NUP54-201ENST00000264883 LDHCP07864 332 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 SCNN1BP51168 640 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 MGAT5Q09328 741 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 AUHQ13825 339 aaKnown RBP14.1□□□□□ -0.15
NUP54-201ENST00000264883 TNFAIP8L3Q5GJ75 292 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 PPP1R18Q6NYC8 613 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 EXOC3L1Q86VI1 746 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 SESTD1Q86VW0 696 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 TRIM59Q8IWR1 403 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 ZC3H3Q8IXZ2 948 aaKnown RBP14.1□□□□□ -0.15
NUP54-201ENST00000264883 TPCN2Q8NHX9 752 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 SNX29Q8TEQ0 813 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 RBM17Q96I25 401 aaKnown RBP14.1□□□□□ -0.15
NUP54-201ENST00000264883 NT5C3AQ9H0P0 336 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 SUDS3Q9H7L9 328 aaPredicted RBP14.1□□□□□ -0.15
NUP54-201ENST00000264883 STX8Q9UNK0 236 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 LRCH1Q9Y2L9 728 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 DAAM1Q9Y4D1 1078 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.1□□□□□ -0.15
NUP54-201ENST00000264883 LTBP1Q14766 1721 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 USP17L3A6NCW0 530 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 USP17L4A6NCW7 530 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 TRAF5O00463 557 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 TPP2P29144 1249 aaPredicted RBP14.1□□□□□ -0.15
NUP54-201ENST00000264883 COASYQ13057 564 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 SLC15A2Q16348 729 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 FAM26FQ5R3K3 315 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 WASHC2DQ5SRD0 308 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 DYMQ7RTS9 669 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 USP17L1Q7RTZ2 530 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 SYCP3Q8IZU3 236 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 ANKLE1Q8NAG6 615 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 SUPT20HQ8NEM7 779 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 ZNF333Q96JL9 665 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 NAP1L3Q99457 506 aaPredicted RBP14.1□□□□□ -0.15
NUP54-201ENST00000264883 NDNQ99608 321 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 SEMA4AQ9H3S1 761 aa14.1□□□□□ -0.15
NUP54-201ENST00000264883 SUCLA2Q9P2R7 463 aaPredicted RBP14.1□□□□□ -0.15
NUP54-201ENST00000264883 RPTORQ8N122 1335 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 TMEM120BA0PK00 339 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 BBOX1O75936 387 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 FGGP02679 453 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 MMP10P09238 476 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 RASA1P20936 1047 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 CACNA2D1P54289 1103 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 RCN2Q14257 317 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 MYBPC3Q14896 1274 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 EDRF1Q3B7T1 1238 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 HYIQ5T013 277 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 C15orf52Q6ZUT6 534 aaKnown RBP14.09□□□□□ -0.15
NUP54-201ENST00000264883 INTS8Q75QN2 995 aaKnown RBP14.09□□□□□ -0.15
NUP54-201ENST00000264883 TXNRD3Q86VQ6 643 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 VSIG1Q86XK7 387 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 ECHDC2Q86YB7 292 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 CCDC65Q8IXS2 484 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 NEDD1Q8NHV4 660 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 UPF1Q92900 1129 aaKnown RBP eCLIP14.09□□□□□ -0.151e-7■□□□□ 10.5
NUP54-201ENST00000264883 NMRK1Q9NWW6 199 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 ATXN10Q9UBB4 475 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 STXBP5LQ9Y2K9 1186 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 SNX24Q9Y343 169 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 PCDHGA4Q9Y5G9 962 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 LGR5O75473 907 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 LDHBP07195 334 aaKnown RBP14.09□□□□□ -0.15
NUP54-201ENST00000264883 GSTT1P30711 240 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 EPS15P42566 896 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 PTENP60484 403 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 PABPC1LQ4VXU2 614 aaKnown RBP14.09□□□□□ -0.15
NUP54-201ENST00000264883 UBAP2Q5T6F2 1119 aaKnown RBP14.09□□□□□ -0.15
NUP54-201ENST00000264883 ZDHHC24Q6UX98 284 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 SYCE1Q8N0S2 351 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 TTC8Q8TAM2 541 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 FBXO25Q8TCJ0 367 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 CKAP2Q8WWK9 683 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 GBP5Q96PP8 586 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 TMEM237Q96Q45 408 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 FAM192AQ9GZU8 254 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 MMADHCQ9H3L0 296 aaPredicted RBP14.09□□□□□ -0.15
NUP54-201ENST00000264883 BLOC1S6Q9UL45 172 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 INTUQ9ULD6 942 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 NR2E1Q9Y466 385 aa14.09□□□□□ -0.15
NUP54-201ENST00000264883 A0A0A6YYK5 440 aaPredicted RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 162.2 ms