RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 CALN1Q9BXU9 219 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 IPO5O00410 1097 aaKnown RBP4.94□□□□□ -1.62
VPS13C-201ENST00000249837 AARSP49588 968 aaKnown RBP eCLIP4.94□□□□□ -1.622e-7■■■■□ 26.2
VPS13C-201ENST00000249837 PPP4CP60510 307 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 IRF2BP1Q8IU81 584 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 JDP2Q8WYK2 163 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 NCAPGQ9BPX3 1015 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 TRABDQ9H4I3 376 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 SLC16A3O15427 465 aaKnown RBP4.94□□□□□ -1.62
VPS13C-201ENST00000249837 VAMP7P51809 220 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 MTM1Q13496 603 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 SPARCL1Q14515 664 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 RINT1Q6NUQ1 792 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 ZNF564Q8TBZ8 553 aaPredicted RBP4.94□□□□□ -1.62
VPS13C-201ENST00000249837 GINM1Q9NU53 330 aa4.94□□□□□ -1.62
VPS13C-201ENST00000249837 STAM2O75886 525 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 SRGAP2CP0DJJ0 459 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 NIM1KQ8IY84 436 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 USP38Q8NB14 1042 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 CPSF2Q9P2I0 782 aaKnown RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 MYO5AQ9Y4I1 1855 aaKnown RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 RASA4BC9J798 803 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 ADAMTS3O15072 1205 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 RASA4O43374 803 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 AKAP3O75969 853 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 TBC1D16Q8TBP0 767 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 TOM1L1O75674 476 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 SYF2O95926 243 aaKnown RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 FAM107AO95990 144 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 APBA3O96018 575 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 PBX1P40424 430 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 CATSPER3Q86XQ3 398 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 ZNF354CQ86Y25 554 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 CNKSR1Q969H4 720 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 ERP44Q9BS26 406 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 RUSC1Q9BVN2 902 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 SIK3Q9Y2K2 1263 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 INHBAP08476 426 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 MMP10P09238 476 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 PON1P27169 355 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 AMPD2Q01433 879 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 NFIAQ12857 509 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 CDC42EP5Q6NZY7 148 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 ARHGEF18Q6ZSZ5 1173 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 EPM2AIP1Q7L775 607 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 FBXO25Q8TCJ0 367 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 CPA5Q8WXQ8 436 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 CAVIN3Q969G5 261 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 NRXN3Q9Y4C0 1643 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 ESYT2A0FGR8 921 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 DENND3A2RUS2 1198 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 RTN2O75298 545 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 IGBP1P78318 339 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 TTMPQ5BVD1 217 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 DARS2Q6PI48 645 aaKnown RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 EPS8L3Q8TE67 593 aaKnown RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 TGS1Q96RS0 853 aaKnown RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 PITPNM3Q9BZ71 974 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 GABBR1Q9UBS5 961 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 PRR12Q9ULL5 1215 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 COMMD10Q9Y6G5 202 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 ABCB11O95342 1321 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 FOXN3O00409 490 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 CPP00450 1065 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 TMEM253P0C7T8 217 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 NPR1P16066 1061 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 HSPA9P38646 679 aaKnown RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 LGSNQ5TDP6 509 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 KDM7AQ6ZMT4 941 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 RFX8Q6ZV50 586 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 CDAN1Q8IWY9 1227 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 SCFD1Q8WVM8 642 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 TRIM11Q96F44 468 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 ZNF668Q96K58 619 aaPredicted RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 CYTH2Q99418 400 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 SMYD3Q9H7B4 428 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 TMBIM4Q9HC24 238 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 RAVER2Q9HCJ3 691 aaKnown RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 CFAP73A6NFT4 308 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 ZNF394Q53GI3 561 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 EEPD1Q7L9B9 569 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 RUBCNQ92622 972 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 SCYL1Q96KG9 808 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 PI4K2AQ9BTU6 479 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 NGRNQ9NPE2 291 aaKnown RBP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 NAGPAQ9UK23 515 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 LRRC10BA6NIK2 292 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 H0YCG3 227 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 GOLGA8RI6L899 631 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 IGF2BP3O00425 579 aaKnown RBP eCLIP4.93□□□□□ -1.62
VPS13C-201ENST00000249837 C1orf228Q6PIY5 440 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 HSPH1Q92598 858 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 NUDCD1Q96RS6 583 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 RMDN3Q96TC7 470 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 BLOC1S4Q9NUP1 217 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 FBXO28Q9NVF7 368 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 PSMA2P25787 234 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 BARGINQ6ZT62 677 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 LONP2Q86WA8 852 aa4.93□□□□□ -1.62
VPS13C-201ENST00000249837 ATP8B4Q8TF62 1192 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms