RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 KCNG1Q9UIX4 513 aa14.38□□□□□ -0.11
CLK3-224ENST00000568605 LCHNA4D1U4 455 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 LINC01553A4QN01 128 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 CSDE1O75534 798 aaKnown RBP14.37□□□□□ -0.11
CLK3-224ENST00000568605 DGKIO75912 1065 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 FOSL2P15408 326 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 DMP1Q13316 513 aaPredicted RBP14.37□□□□□ -0.11
CLK3-224ENST00000568605 CDCA2Q69YH5 1023 aaPredicted RBP14.37□□□□□ -0.11
CLK3-224ENST00000568605 NOTUMQ6P988 496 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 RTN4RL1Q86UN2 441 aaPredicted RBP14.37□□□□□ -0.11
CLK3-224ENST00000568605 SYT2Q8N9I0 419 aaPredicted RBP14.37□□□□□ -0.11
CLK3-224ENST00000568605 DEPTORQ8TB45 409 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 PRIMPOLQ96LW4 560 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 GUCD1Q96NT3 240 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 PLIN2Q99541 437 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 TRAIPQ9BWF2 469 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 C17orf75Q9HAS0 396 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 RC3H2Q9HBD1 1191 aaKnown RBP14.37□□□□□ -0.11
CLK3-224ENST00000568605 PRMT7Q9NVM4 692 aaPredicted RBP14.37□□□□□ -0.11
CLK3-224ENST00000568605 STK17AQ9UEE5 414 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 DAXXQ9UER7 740 aaPredicted RBP14.37□□□□□ -0.11
CLK3-224ENST00000568605 TRANK1O15050 2925 aa14.37□□□□□ -0.11
CLK3-224ENST00000568605 A0A0U1RQF3 1178 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 BRD1O95696 1058 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 EOMESO95936 686 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 PLA2G4BP0C869 781 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 PLCG1P19174 1290 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 GUCY2CP25092 1073 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 EFNA5P52803 228 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 ERVK-21P61565 698 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 GRIN1Q05586 938 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 MBTD1Q05BQ5 628 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 PKP1Q13835 747 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 GRIN2CQ14957 1233 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 KARSQ15046 597 aaKnown RBP14.36□□□□□ -0.11
CLK3-224ENST00000568605 TMEM132AQ24JP5 1023 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 RINT1Q6NUQ1 792 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 CCDC73Q6ZRK6 1079 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 KCNK18Q7Z418 384 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 HACE1Q8IYU2 909 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 LINC00301Q8NCQ3 95 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 ARNTL2Q8WYA1 636 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 LARP4BQ92615 738 aaKnown RBP14.36□□□□□ -0.11
CLK3-224ENST00000568605 SYMPKQ92797 1274 aaKnown RBP14.36□□□□□ -0.11
CLK3-224ENST00000568605 CDX2Q99626 313 aaPredicted RBP14.36□□□□□ -0.11
CLK3-224ENST00000568605 PRDM12Q9H4Q4 367 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 MINDY3Q9H8M7 445 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 FAM105AQ9NUU6 356 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 STXBP5LQ9Y2K9 1186 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 CHD9Q3L8U1 2897 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 CDH23Q9H251 3354 aa14.36□□□□□ -0.11
CLK3-224ENST00000568605 GTPBP6O43824 516 aaPredicted RBP14.35□□□□□ -0.11
CLK3-224ENST00000568605 TSPAN1O60635 241 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 HIP1RO75146 1068 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 KRT18P05783 430 aaKnown RBP14.35□□□□□ -0.11
CLK3-224ENST00000568605 KRT85P78386 507 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 MAPK6Q16659 721 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 FOXD4L6Q3SYB3 417 aaPredicted RBP14.35□□□□□ -0.11
CLK3-224ENST00000568605 FOXD4L3Q6VB84 417 aaPredicted RBP14.35□□□□□ -0.11
CLK3-224ENST00000568605 ECHDC2Q86YB7 292 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 LRRC43Q8N309 656 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 RNF169Q8NCN4 708 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 CNNM3Q8NE01 707 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 FBXO22Q8NEZ5 403 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 MYLIPQ8WY64 445 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 RAD54LQ92698 747 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 ZNF689Q96CS4 500 aaPredicted RBP14.35□□□□□ -0.11
CLK3-224ENST00000568605 PGBD4Q96DM1 585 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 RUSC1Q9BVN2 902 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 MRPL9Q9BYD2 267 aaKnown RBP14.35□□□□□ -0.11
CLK3-224ENST00000568605 TRIM6Q9C030 488 aaPredicted RBP14.35□□□□□ -0.11
CLK3-224ENST00000568605 MTUS1Q9ULD2 1270 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 ODF2LQ9ULJ1 636 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 PRRC2BQ5JSZ5 2229 aaKnown RBP14.35□□□□□ -0.11
CLK3-224ENST00000568605 ANK1P16157 1881 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 CNTNAP2Q9UHC6 1331 aa14.35□□□□□ -0.11
CLK3-224ENST00000568605 CCDC169A6NNP5 214 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 H0YCG3 227 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 CUTAO60888 179 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 TBCAO75347 108 aaKnown RBP14.34□□□□□ -0.11
CLK3-224ENST00000568605 CTNNB1P35222 781 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 ANP32AP39687 249 aaKnown RBP14.34□□□□□ -0.11
CLK3-224ENST00000568605 STAT6P42226 847 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 SMTNP53814 917 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 SLC12A3P55017 1021 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 FAM189BP81408 668 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 PAN2Q504Q3 1202 aaKnown RBP14.34□□□□□ -0.11
CLK3-224ENST00000568605 SPECC1Q5M775 1068 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 RRAGBQ5VZM2 374 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 PPP4R3CPQ6ZMV5 832 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 C1orf186Q6ZWK4 172 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 APBB1IPQ7Z5R6 666 aaPredicted RBP14.34□□□□□ -0.11
CLK3-224ENST00000568605 GPBP1Q86WP2 473 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 CRIPAKQ8N1N5 446 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 EPSTI1Q96J88 318 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 CLIC6Q96NY7 704 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 C11orf84Q9BUA3 381 aaPredicted RBP14.34□□□□□ -0.11
CLK3-224ENST00000568605 TMEM117Q9H0C3 514 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 CERS4Q9HA82 394 aa14.34□□□□□ -0.11
CLK3-224ENST00000568605 KMT5AQ9NQR1 393 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms