RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 TMEM161BQ8NDZ6 487 aa33.65■■■□□ 2.98
CTCF-203ENST00000566078 TYW1Q9NV66 732 aaKnown RBP33.65■■■□□ 2.98
CTCF-203ENST00000566078 GTF2BQ00403 316 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 MKRN4PQ13434 485 aaPredicted RBP33.64■■■□□ 2.98
CTCF-203ENST00000566078 EFCAB12Q6NXP0 572 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 RETREG2Q8NC44 543 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 NTPCRQ9BSD7 190 aaKnown RBP33.64■■■□□ 2.98
CTCF-203ENST00000566078 KATNAL1Q9BW62 490 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 DDX20Q9UHI6 824 aaKnown RBP33.64■■■□□ 2.98
CTCF-203ENST00000566078 ADGRA3Q8IWK6 1321 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 PDXKO00764 312 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 MAGEB2O15479 319 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 KPNA6O60684 536 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 ADAMTS4O75173 837 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 SERPINC1P01008 464 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 KLRC1P26715 233 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 NAMPTP43490 491 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 NKX3-2P78367 333 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 METTL13Q8N6R0 699 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 PSPC1Q8WXF1 523 aaKnown RBP33.64■■■□□ 2.98
CTCF-203ENST00000566078 KCNG1Q9UIX4 513 aa33.64■■■□□ 2.98
CTCF-203ENST00000566078 HAS3O00219 553 aa33.63■■■□□ 2.97
CTCF-203ENST00000566078 CALUO43852 315 aaPredicted RBP33.63■■■□□ 2.97
CTCF-203ENST00000566078 SMIM10L2AP0DMW4 78 aa33.63■■■□□ 2.97
CTCF-203ENST00000566078 SMIM10L2BP0DMW5 78 aa33.63■■■□□ 2.97
CTCF-203ENST00000566078 ZNF75DP51815 510 aa33.63■■■□□ 2.97
CTCF-203ENST00000566078 PRPF31Q8WWY3 499 aaKnown RBP33.63■■■□□ 2.97
CTCF-203ENST00000566078 EEF2KMTQ96G04 330 aa33.63■■■□□ 2.97
CTCF-203ENST00000566078 ACCSQ96QU6 501 aa33.63■■■□□ 2.97
CTCF-203ENST00000566078 TRAF3IP3Q9Y228 551 aa33.63■■■□□ 2.97
CTCF-203ENST00000566078 DENND3A2RUS2 1198 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 LRRIQ4A6NIV6 560 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 KCNJ18B7U540 433 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 ZEB2O60315 1214 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 CLCN3P51790 818 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 CAPSQ13938 189 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 KCNJ12Q14500 433 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 EDRF1Q3B7T1 1238 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 MTHFD1LQ6UB35 978 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 LRRC55Q6ZSA7 311 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 SYCP3Q8IZU3 236 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 HVCN1Q96D96 273 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 IKZF4Q9H2S9 585 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 IFNKQ9P0W0 207 aa33.62■■■□□ 2.97
CTCF-203ENST00000566078 SUCLA2Q9P2R7 463 aaPredicted RBP33.62■■■□□ 2.97
CTCF-203ENST00000566078 H0YCG3 227 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 FGFR1OPO95684 399 aaKnown RBP33.61■■■□□ 2.97
CTCF-203ENST00000566078 DNM2P50570 870 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 SPAG1Q07617 926 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 IRF2BP1Q8IU81 584 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 DEPTORQ8TB45 409 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 PPP1R13LQ8WUF5 828 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 TMEM206Q9H813 350 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 ARHGAP28Q9P2N2 729 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 RRN3P2A6NIE6 340 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 TGFB1I1O43294 461 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 FKBP3Q00688 224 aaKnown RBP33.61■■■□□ 2.97
CTCF-203ENST00000566078 FAM114A1Q8IWE2 563 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 LMBR1Q8WVP7 490 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 MTG1Q9BT17 334 aaPredicted RBP33.61■■■□□ 2.97
CTCF-203ENST00000566078 SETD4Q9NVD3 440 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 MAGEC2Q9UBF1 373 aaPredicted RBP33.61■■■□□ 2.97
CTCF-203ENST00000566078 TBX20Q9UMR3 447 aa33.61■■■□□ 2.97
CTCF-203ENST00000566078 NRCAMQ92823 1304 aa33.6■■■□□ 2.97
CTCF-203ENST00000566078 MYCNP04198 464 aaPredicted RBP33.6■■■□□ 2.97
CTCF-203ENST00000566078 LAMTOR4Q0VGL1 99 aa33.6■■■□□ 2.97
CTCF-203ENST00000566078 MXD4Q14582 209 aaPredicted RBP33.6■■■□□ 2.97
CTCF-203ENST00000566078 TCP11X2Q5H9J9 407 aa33.6■■■□□ 2.97
CTCF-203ENST00000566078 MARCH8Q5T0T0 291 aa33.6■■■□□ 2.97
CTCF-203ENST00000566078 CREBRFQ8IUR6 639 aa33.6■■■□□ 2.97
CTCF-203ENST00000566078 LINC01465Q8N7H1 131 aa33.6■■■□□ 2.97
CTCF-203ENST00000566078 CNOT6LQ96LI5 555 aaKnown RBP33.6■■■□□ 2.97
CTCF-203ENST00000566078 GBP3Q9H0R5 595 aa33.6■■■□□ 2.97
CTCF-203ENST00000566078 HMX1Q9NP08 348 aaPredicted RBP33.6■■■□□ 2.97
CTCF-203ENST00000566078 PTPN22Q9Y2R2 807 aa33.6■■■□□ 2.97
CTCF-203ENST00000566078 CCDC173Q0VFZ6 552 aa33.59■■■□□ 2.97
CTCF-203ENST00000566078 HS2ST1Q7LGA3 356 aa33.59■■■□□ 2.97
CTCF-203ENST00000566078 ANKRD20A12PQ8NF67 263 aa33.59■■■□□ 2.97
CTCF-203ENST00000566078 XPO4Q9C0E2 1151 aaKnown RBP33.59■■■□□ 2.97
CTCF-203ENST00000566078 EEF1GP26641 437 aaKnown RBP33.58■■■□□ 2.97
CTCF-203ENST00000566078 CXCL17Q6UXB2 119 aa33.58■■■□□ 2.97
CTCF-203ENST00000566078 RHPN2Q8IUC4 686 aa33.58■■■□□ 2.97
CTCF-203ENST00000566078 ZC3H3Q8IXZ2 948 aaKnown RBP33.58■■■□□ 2.97
CTCF-203ENST00000566078 KLHDC9Q8NEP7 349 aa33.58■■■□□ 2.97
CTCF-203ENST00000566078 SH3TC2Q8TF17 1288 aa33.58■■■□□ 2.97
CTCF-203ENST00000566078 EXOC7Q9UPT5 735 aa33.58■■■□□ 2.97
CTCF-203ENST00000566078 NR3C1P04150 777 aa33.57■■■□□ 2.97
CTCF-203ENST00000566078 NR2F2P24468 414 aa33.57■■■□□ 2.97
CTCF-203ENST00000566078 CST5P28325 142 aaPredicted RBP33.57■■■□□ 2.97
CTCF-203ENST00000566078 ABCD1P33897 745 aa33.57■■■□□ 2.97
CTCF-203ENST00000566078 UBASH3AP57075 661 aa33.57■■■□□ 2.97
CTCF-203ENST00000566078 KRT31Q15323 416 aa33.57■■■□□ 2.97
CTCF-203ENST00000566078 MAP4K3Q8IVH8 894 aa33.57■■■□□ 2.97
CTCF-203ENST00000566078 CEP63Q96MT8 703 aa33.57■■■□□ 2.97
CTCF-203ENST00000566078 LIMA1Q9UHB6 759 aaKnown RBP33.57■■■□□ 2.97
CTCF-203ENST00000566078 CLIC2O15247 247 aa33.57■■■□□ 2.96
CTCF-203ENST00000566078 CBFA2T2O43439 604 aa33.57■■■□□ 2.96
CTCF-203ENST00000566078 MSCO60682 206 aa33.57■■■□□ 2.96
CTCF-203ENST00000566078 TMOD1P28289 359 aa33.57■■■□□ 2.96
CTCF-203ENST00000566078 ADAM9Q13443 819 aa33.57■■■□□ 2.96
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms