RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 MCM9Q9NXL9 1143 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 FNDC3AQ9Y2H6 1198 aaKnown RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 GDAQ9Y2T3 454 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 PASKQ96RG2 1323 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 A0A1W2PNR3 127 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 TRIM49BA6NDI0 452 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 MYO1FO00160 1098 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SPINT1O43278 529 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SMPD1P17405 629 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 LACTBP83111 547 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 NEDD9Q14511 834 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 RPS6KA1Q15418 735 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SNCBQ16143 134 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SLC9C1Q4G0N8 1177 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 COL13A1Q5TAT6 717 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 GKAP1Q5VSY0 366 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SHC4Q6S5L8 630 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 RAD9BQ6WBX8 426 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 KRT26Q7Z3Y9 468 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 TBC1D1Q86TI0 1168 aaPredicted RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 SP8Q8IXZ3 490 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 CELF2-AS1Q8N7Q2 184 aa5.98□□□□□ -1.45
LIMA1-203ENST00000547825 ENOX1Q8TC92 643 aaKnown RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 THOC1Q96FV9 657 aaKnown RBP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 NIP7Q9Y221 180 aaKnown RBP eCLIP5.98□□□□□ -1.45
LIMA1-203ENST00000547825 MYH1P12882 1939 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 BICDL2A1A5D9 508 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 TTC24A2A3L6 582 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 RPLP1P05386 114 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 PARP1P09874 1014 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 ITGA6P23229 1130 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 VEGFBP49765 207 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 SEC24CP53992 1094 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 KLHL30Q0D2K2 578 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 KRT31Q15323 416 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 TRIM58Q8NG06 486 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 RPGRQ92834 1020 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 MMS19Q96T76 1030 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 TUBGCP2Q9BSJ2 902 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 NSRP1Q9H0G5 558 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 BRD7Q9NPI1 651 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 MGAMO43451 1857 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 NAV1Q8NEY1 1877 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 RLFQ13129 1914 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 GOLGA8KD6RF30 607 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 RNF225M0QZC1 329 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 IRS4O14654 1257 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 NCK2O43639 380 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 MFAP3LO75121 409 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 PAGE1O75459 146 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 KRT14P02533 472 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 FXR1P51114 621 aaKnown RBP eCLIP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 MXRA7P84157 204 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 TRIM14Q14142 442 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 DALRD3Q5D0E6 543 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 TTLL6Q8N841 843 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 FANCBQ8NB91 859 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 TTLL11Q8NHH1 800 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 SNIP1Q8TAD8 396 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 KIFC2Q96AC6 838 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 RNPC3Q96LT9 517 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 CNTNAP3BQ96NU0 1288 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 OXCT2Q9BYC2 517 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 CNTNAP3Q9BZ76 1288 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 TPX2Q9ULW0 747 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 PLXNB2O15031 1838 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 FIGNL2A6NMB9 653 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 PRKAB2O43741 272 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 CCNT1O60563 726 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 CTNND1O60716 968 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 ATP1A1P05023 1023 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 TSPY3P0CV98 308 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 TSPY8P0CW00 308 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 NR1D1P20393 614 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 MSX1P28360 303 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 GSTT1P30711 240 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 EIF6P56537 245 aaKnown RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 ZMYM1Q5SVZ6 1142 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 RUFY4Q6ZNE9 571 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 FBXO27Q8NI29 283 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 ZBED3Q96IU2 234 aaPredicted RBP5.97□□□□□ -1.45
LIMA1-203ENST00000547825 FAM167BQ9BTA0 163 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 HYOU1Q9Y4L1 999 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 SSC5DA1L4H1 1573 aa5.97□□□□□ -1.45
LIMA1-203ENST00000547825 KLF4O43474 513 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 UQCRFS1P1P0C7P4 283 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 GUCY2CP25092 1073 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 RBM5P52756 815 aaKnown RBP eCLIP5.96□□□□□ -1.45
LIMA1-203ENST00000547825 GRAPQ13588 217 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 LRRC41Q15345 812 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 INF2Q27J81 1249 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 RFX7Q2KHR2 1363 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 APTXQ7Z2E3 356 aaKnown RBP5.96□□□□□ -1.45
LIMA1-203ENST00000547825 RAB44Q7Z6P3 723 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-203ENST00000547825 SYCP3Q8IZU3 236 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 GRAPLQ8TC17 118 aaPredicted RBP5.96□□□□□ -1.45
LIMA1-203ENST00000547825 ARHGEF2Q92974 986 aaKnown RBP5.96□□□□□ -1.45
LIMA1-203ENST00000547825 LRRC45Q96CN5 670 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 CCDC51Q96ER9 411 aa5.96□□□□□ -1.45
LIMA1-203ENST00000547825 TMEM74Q96NL1 305 aa5.96□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 151.8 ms