RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 SLMAPQ14BN4 828 aa19.96■□□□□ 0.79
USP48-204ENST00000400301 CNKSR2Q8WXI2 1034 aa19.96■□□□□ 0.79
USP48-204ENST00000400301 VCPKMTQ9H867 229 aa19.96■□□□□ 0.79
USP48-204ENST00000400301 RGPD5Q99666 1765 aa19.96■□□□□ 0.79
USP48-204ENST00000400301 GAKO14976 1311 aa19.96■□□□□ 0.79
USP48-204ENST00000400301 SREBF1P36956 1147 aa19.96■□□□□ 0.79
USP48-204ENST00000400301 ECE1P42892 770 aa19.96■□□□□ 0.79
USP48-204ENST00000400301 EHD4Q9H223 541 aa19.96■□□□□ 0.79
USP48-204ENST00000400301 PODXLO00592 558 aa19.95■□□□□ 0.79
USP48-204ENST00000400301 TTI1O43156 1089 aa19.95■□□□□ 0.79
USP48-204ENST00000400301 MAN1A1P33908 653 aa19.95■□□□□ 0.79
USP48-204ENST00000400301 MAGEA9P43362 315 aa19.95■□□□□ 0.79
USP48-204ENST00000400301 MAGOHP61326 146 aaKnown RBP19.95■□□□□ 0.79
USP48-204ENST00000400301 MIS18BP1Q6P0N0 1132 aa19.95■□□□□ 0.79
USP48-204ENST00000400301 DDX42Q86XP3 938 aaKnown RBP eCLIP19.95■□□□□ 0.79
USP48-204ENST00000400301 ZIM3Q96PE6 472 aa19.95■□□□□ 0.79
USP48-204ENST00000400301 MMTAG2Q9BU76 263 aaKnown RBP19.95■□□□□ 0.79
USP48-204ENST00000400301 TRIM7Q9C029 511 aa19.95■□□□□ 0.79
USP48-204ENST00000400301 BAIAP2L1Q9UHR4 511 aa19.95■□□□□ 0.79
USP48-204ENST00000400301 AKAP3O75969 853 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 HDLBPQ00341 1268 aaKnown RBP19.95■□□□□ 0.78
USP48-204ENST00000400301 GUCY1A3Q02108 690 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 SPP2Q13103 211 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 CYP4F22Q6NT55 531 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 TAB3Q8N5C8 712 aaPredicted RBP19.95■□□□□ 0.78
USP48-204ENST00000400301 PRMT6Q96LA8 375 aaPredicted RBP19.95■□□□□ 0.78
USP48-204ENST00000400301 FBXO28Q9NVF7 368 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 K7ERI5 159 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 PSMC5P62195 406 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 LACTBP83111 547 aaPredicted RBP19.95■□□□□ 0.78
USP48-204ENST00000400301 ADCY1Q08828 1119 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 MIIPQ5JXC2 388 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 KRT39Q6A163 491 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 SLC30A10Q6XR72 485 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 NCAPG2Q86XI2 1143 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 CCDC197Q8NCU1 140 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 ZNF564Q8TBZ8 553 aaPredicted RBP19.95■□□□□ 0.78
USP48-204ENST00000400301 CNOT10Q9H9A5 744 aaKnown RBP19.95■□□□□ 0.78
USP48-204ENST00000400301 RNF146Q9NTX7 359 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 TRPC6Q9Y210 931 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 SIK3Q9Y2K2 1263 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 EPHB6O15197 1021 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 SLURP2P0DP57 97 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 RFX1P22670 979 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 C15orf52Q6ZUT6 534 aaKnown RBP19.95■□□□□ 0.78
USP48-204ENST00000400301 CCDC63Q8NA47 563 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 FAM81BQ96LP2 452 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 FAM213AQ9BRX8 229 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 ANAPC5Q9UJX4 755 aa19.95■□□□□ 0.78
USP48-204ENST00000400301 DDR1Q08345 913 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 SRLQ86TD4 932 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 ZFPM1Q8IX07 1006 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 CYP2W1Q8TAV3 490 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 NUP85Q9BW27 656 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 RCCD1A6NED2 376 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 EIF3DO15371 548 aaKnown RBP eCLIP19.94■□□□□ 0.78
USP48-204ENST00000400301 ACSL3O95573 720 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 BBOF1Q8ND07 529 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 GABBR1Q9UBS5 961 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 ADAMTS3O15072 1205 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 DNAAF5Q86Y56 855 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 MCPH1Q8NEM0 835 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 MKNK1Q9BUB5 465 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 MRPL47Q9HD33 250 aaKnown RBP19.94■□□□□ 0.78
USP48-204ENST00000400301 ZNF70Q9UC06 446 aaPredicted RBP19.94■□□□□ 0.78
USP48-204ENST00000400301 PRDM4Q9UKN5 801 aa19.94■□□□□ 0.78
USP48-204ENST00000400301 REXO2Q9Y3B8 237 aaKnown RBP19.94■□□□□ 0.78
USP48-204ENST00000400301 TNNC2P02585 160 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 ZNF772Q68DY9 489 aaPredicted RBP19.93■□□□□ 0.78
USP48-204ENST00000400301 APOBEC3HQ6NTF7 200 aaKnown RBP19.93■□□□□ 0.78
USP48-204ENST00000400301 CYP26A1O43174 497 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 HOXA10P31260 410 aaPredicted RBP19.93■□□□□ 0.78
USP48-204ENST00000400301 YWHABP31946 246 aaKnown RBP19.93■□□□□ 0.78
USP48-204ENST00000400301 YWHAEP62258 255 aaKnown RBP19.93■□□□□ 0.78
USP48-204ENST00000400301 CCDC6Q16204 474 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 TADA2BQ86TJ2 420 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 FAM151AQ8WW52 585 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 RSAD2Q8WXG1 361 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 HSPBP1Q9NZL4 362 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 CSADQ9Y600 493 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 RXRBP28702 533 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 TM4SF1P30408 202 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 HDAC7Q8WUI4 952 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 HAS1Q92839 578 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 TRIM51Q9BSJ1 452 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 C5P01031 1676 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 POLRMTO00411 1230 aaKnown RBP19.93■□□□□ 0.78
USP48-204ENST00000400301 IRAK1P51617 712 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 AGPAT3Q9NRZ7 376 aa19.93■□□□□ 0.78
USP48-204ENST00000400301 TRIM66O15016 1216 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 CD58P19256 250 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 EEPD1Q7L9B9 569 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 POC1B-GALNT4F8VUJ3 575 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 POLR2BP30876 1174 aaKnown RBP19.92■□□□□ 0.78
USP48-204ENST00000400301 SFNP31947 248 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 SNRNP48Q6IEG0 339 aaKnown RBP19.92■□□□□ 0.78
USP48-204ENST00000400301 SWSAP1Q6NVH7 229 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 ZNF571Q7Z3V5 609 aaPredicted RBP19.92■□□□□ 0.78
USP48-204ENST00000400301 PSMD1Q99460 953 aa19.92■□□□□ 0.78
USP48-204ENST00000400301 TLR10Q9BXR5 811 aa19.92■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms