RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 NDFIP2Q9NV92 336 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 THRAP3Q9Y2W1 955 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 E7EWF7 191 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 C16orf89Q6UX73 402 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 SYMPKQ92797 1274 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 CDCA7Q9BWT1 371 aaPredicted RBP14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 FOXP3Q9BZS1 431 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 FRMPD2Q68DX3 1309 aaPredicted RBP14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 LAMB3Q13751 1172 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 ARMCX4Q5H9R4 360 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 DAB2IPQ5VWQ8 1189 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 TOGARAM2Q6ZUX3 1019 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 MAPKAPK5Q8IW41 473 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 HOMEZQ8IX15 550 aa14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 TGS1Q96RS0 853 aaKnown RBP14.79□□□□□ -0.04
CCDC88A-201ENST00000263630 CFAP69A5D8W1 941 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 RSPH10B2B2RC85 870 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 RSPH10BP0C881 870 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 RAD51Q06609 339 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 C11orf88Q6PI97 169 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 DCUN1D1Q96GG9 259 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 CCDC134Q9H6E4 229 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 TBC1D12O60347 775 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 LRRC74AQ0VAA2 488 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 CENPAP49450 140 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 AP1S2P56377 157 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 USP39Q53GS9 565 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 APOA5Q6Q788 366 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 PCYOX1LQ8NBM8 494 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 METTL22Q9BUU2 404 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 SSH2Q76I76 1423 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 MYO1CO00159 1063 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 SEC24DO94855 1032 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 CALB1P05937 261 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 GTF2H3Q13889 308 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 SHROOM1Q2M3G4 852 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 VPS11Q9H270 941 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 CXCR5P32302 372 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 ARPP19P56211 112 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 PTGDRQ13258 359 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 CASP8Q14790 479 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 EXD1Q8NHP7 514 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 KRT84Q9NSB2 600 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 SMARCAL1Q9NZC9 954 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 DTNAQ9Y4J8 743 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 SRPRBQ9Y5M8 271 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 HMOX2P30519 316 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 HES6Q96HZ4 224 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 VIPAS39Q9H9C1 493 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 RASGRF1Q13972 1273 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 PLAAQ9Y263 795 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 PPIP5K1Q6PFW1 1433 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 ARL4DP49703 201 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 ARFIP2P53365 341 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 ASPRV1Q53RT3 343 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 GPATCH4Q5T3I0 446 aaKnown RBP14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 PCDHA13Q9Y5I0 950 aa14.78□□□□□ -0.04
CCDC88A-201ENST00000263630 PRKG1Q13976 671 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 DSTYKQ6XUX3 929 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 SPATA16Q9BXB7 569 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 NXF1Q9UBU9 619 aaKnown RBP14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 RNF103O00237 685 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 FOXP2O15409 715 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 LDHAP00338 332 aaKnown RBP14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 KLC1Q07866 573 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 SNX30Q5VWJ9 437 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 SULF1Q8IWU6 871 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 CCNYL1Q8N7R7 359 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 KLRF2D3W0D1 207 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 DPYSL4O14531 572 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 NLRP11P59045 1033 aaKnown RBP14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 MAPRE1Q15691 268 aaKnown RBP14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 SPDYAQ5MJ70 313 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 ZNF544Q6NX49 715 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 SP110Q9HB58 689 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 GMNCA6NCL1 334 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 ZNF658Q5TYW1 1059 aaPredicted RBP14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 IKBIPQ70UQ0 350 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 TM6SF1Q9BZW5 370 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 USP40Q9NVE5 1235 aa14.77□□□□□ -0.04
CCDC88A-201ENST00000263630 DLGAP3O95886 979 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 GNAT1P11488 350 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 TSPY1Q01534 308 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 CHRNA2Q15822 529 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 CCDC184Q52MB2 194 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 APPL1Q9UKG1 709 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 CHMP2BQ9UQN3 213 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 NCF4Q15080 339 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 CDO1Q16878 200 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 SH3BP5LQ7L8J4 393 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 FLT4P35916 1363 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 P2RX5Q93086 422 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 MYL10Q9BUA6 226 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 SPRTNQ9H040 489 aaPredicted RBP14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 ZMYND10O75800 440 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 GFPT2O94808 682 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 TFDP2Q14188 446 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 TSC22D1Q15714 1073 aa14.77□□□□□ -0.05
CCDC88A-201ENST00000263630 SLC30A9Q6PML9 568 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 146 ms