RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 PRR16Q569H4 304 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 WLSQ5T9L3 541 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 DCAF12L1Q5VU92 463 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 ETNPPLQ8TBG4 499 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 NEK9Q8TD19 979 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 PABPC3Q9H361 631 aaKnown RBP19.03■□□□□ 0.64
SYNE3-202ENST00000553340 ZDHHC18Q9NUE0 388 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 STK24Q9Y6E0 443 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 CCDC169A6NNP5 214 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 TBX3O15119 743 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 PMS2P54278 862 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 QRICH1Q2TAL8 776 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 ANKS4BQ8N8V4 417 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 CCDC197Q8NCU1 140 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 MAGEC3Q8TD91 643 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 ARHGEF1Q92888 912 aaKnown RBP19.03■□□□□ 0.64
SYNE3-202ENST00000553340 STK33Q9BYT3 514 aa19.03■□□□□ 0.64
SYNE3-202ENST00000553340 NRAPQ86VF7 1730 aa19.02■□□□□ 0.64
SYNE3-202ENST00000553340 RSPH10B2B2RC85 870 aa19.02■□□□□ 0.64
SYNE3-202ENST00000553340 PPP1R12BO60237 982 aaPredicted RBP19.02■□□□□ 0.64
SYNE3-202ENST00000553340 DNAJC8O75937 253 aaPredicted RBP19.02■□□□□ 0.64
SYNE3-202ENST00000553340 RSPH10BP0C881 870 aa19.02■□□□□ 0.64
SYNE3-202ENST00000553340 ABCB4P21439 1286 aa19.02■□□□□ 0.64
SYNE3-202ENST00000553340 ARHGAP4P98171 946 aa19.02■□□□□ 0.64
SYNE3-202ENST00000553340 AP3B2Q13367 1082 aa19.02■□□□□ 0.64
SYNE3-202ENST00000553340 DHX34Q14147 1143 aaKnown RBP19.02■□□□□ 0.64
SYNE3-202ENST00000553340 DENND2CQ68D51 928 aa19.02■□□□□ 0.64
SYNE3-202ENST00000553340 PGM2Q96G03 612 aa19.02■□□□□ 0.64
SYNE3-202ENST00000553340 FOCADQ5VW36 1801 aa19.02■□□□□ 0.64
SYNE3-202ENST00000553340 C10orf71Q711Q0 1435 aa19.02■□□□□ 0.63
SYNE3-202ENST00000553340 ADAT2Q7Z6V5 191 aaKnown RBP19.02■□□□□ 0.63
SYNE3-202ENST00000553340 CEP57Q86XR8 500 aa19.02■□□□□ 0.63
SYNE3-202ENST00000553340 RPGRQ92834 1020 aaKnown RBP19.02■□□□□ 0.63
SYNE3-202ENST00000553340 MCM8Q9UJA3 840 aa19.02■□□□□ 0.63
SYNE3-202ENST00000553340 MYO3BQ8WXR4 1341 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 MPHOSPH10O00566 681 aaKnown RBP19.01■□□□□ 0.63
SYNE3-202ENST00000553340 TRIM37O94972 964 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 SHBGP04278 402 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 CHN1P15882 459 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 PSMC2P35998 433 aaKnown RBP19.01■□□□□ 0.63
SYNE3-202ENST00000553340 KIAA1755Q5JYT7 1200 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 FAM186BQ8IYM0 893 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 CNBD1Q8NA66 436 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 OLIG1Q8TAK6 271 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 BHMT2Q9H2M3 363 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 RASAL2Q9UJF2 1139 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 TPX2Q9ULW0 747 aaKnown RBP19.01■□□□□ 0.63
SYNE3-202ENST00000553340 CCT8L1PA6NM43 557 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 MMEP08473 750 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 NF2P35240 595 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 PLTPP55058 493 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 KCNA1Q09470 495 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 DRAP1Q14919 205 aaPredicted RBP19.01■□□□□ 0.63
SYNE3-202ENST00000553340 FMNL3Q8IVF7 1028 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 GLG1Q92896 1179 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 BORCS6Q96GS4 357 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 SCLT1Q96NL6 688 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 ZNF317Q96PQ6 595 aaPredicted RBP19.01■□□□□ 0.63
SYNE3-202ENST00000553340 SELENOSQ9BQE4 189 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 EPB41L4BQ9H329 900 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 DNAJC12Q9UKB3 198 aa19.01■□□□□ 0.63
SYNE3-202ENST00000553340 MMP13P45452 471 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 DRG2P55039 364 aaKnown RBP19■□□□□ 0.63
SYNE3-202ENST00000553340 KLRC3Q07444 240 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 Q4G0T1 1027 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 JAMLQ86YT9 394 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 ERVK-5Q9HDB9 667 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 IGSF9BQ9UPX0 1349 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 TLDC2A0PJX2 215 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 ASAP2O43150 1006 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 TGFB1I1O43294 461 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 C21orf2O43822 256 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 SHMT1P34896 483 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 COPB2P35606 906 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 FAM228AQ86W67 206 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 CRYGNQ8WXF5 182 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 DDX4Q9NQI0 724 aaKnown RBP19■□□□□ 0.63
SYNE3-202ENST00000553340 OLFML3Q9NRN5 406 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 ODF2LQ9ULJ1 636 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 SNX24Q9Y343 169 aa19■□□□□ 0.63
SYNE3-202ENST00000553340 MEIS2O14770 477 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 RGS16O15492 202 aaPredicted RBP18.99■□□□□ 0.63
SYNE3-202ENST00000553340 GAP43P17677 238 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 TNFAIP3P21580 790 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 SLC8A1P32418 973 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 CYP4A11Q02928 519 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 MAPK7Q13164 816 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 ZNF211Q13398 564 aaPredicted RBP18.99■□□□□ 0.63
SYNE3-202ENST00000553340 NBPF9Q3BBW0 867 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 MSL1Q68DK7 614 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 CROCCP2Q86T23 111 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 FAM20AQ96MK3 541 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 RUSC1Q9BVN2 902 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 KIAA0391O15091 583 aaKnown RBP18.99■□□□□ 0.63
SYNE3-202ENST00000553340 PPIP5K2O43314 1243 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 RAD21O60216 631 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 EZRP15311 586 aaKnown RBP18.99■□□□□ 0.63
SYNE3-202ENST00000553340 FMO5P49326 533 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 FBXO25Q8TCJ0 367 aa18.99■□□□□ 0.63
SYNE3-202ENST00000553340 SYT11Q9BT88 431 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms