RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ACO2Q99798 780 aaKnown RBP9.43□□□□□ -0.9
NUP54-215ENST00000514313 RNF38Q9H0F5 515 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 HSPBP1Q9NZL4 362 aa9.43□□□□□ -0.9
NUP54-215ENST00000514313 MYPNQ86TC9 1320 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 ZNF839A8K0R7 811 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 APAF1O14727 1248 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 LDHAP00338 332 aaKnown RBP9.42□□□□□ -0.9
NUP54-215ENST00000514313 NBPF7P0C2Y1 421 aaPredicted RBP9.42□□□□□ -0.9
NUP54-215ENST00000514313 MAPKAPK2P49137 400 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 USP14P54578 494 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 PPARAQ07869 468 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 NOLC1Q14978 699 aaKnown RBP eCLIP9.42□□□□□ -0.9
NUP54-215ENST00000514313 COBLL1Q53SF7 1204 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 ETV3LQ6ZN32 361 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 AMIGO3Q86WK7 504 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 MAP3K14Q99558 947 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 MTG2Q9H4K7 406 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 INCENPQ9NQS7 918 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 DDX21Q9NR30 783 aaKnown RBP eCLIP9.42□□□□□ -0.9
NUP54-215ENST00000514313 MAN1C1Q9NR34 630 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 KLHL14Q9P2G3 628 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 USP25Q9UHP3 1055 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 PRSS50Q9UI38 385 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 DENND2AQ9ULE3 1009 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 PTPN22Q9Y2R2 807 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 CDY2AQ9Y6F7 541 aa9.42□□□□□ -0.9
NUP54-215ENST00000514313 IGHA1P01876 353 aa9.41□□□□□ -0.9
NUP54-215ENST00000514313 SAFBQ15424 915 aaKnown RBP eCLIP9.41□□□□□ -0.9
NUP54-215ENST00000514313 CR1LQ2VPA4 569 aa9.41□□□□□ -0.9
NUP54-215ENST00000514313 LIPIQ6XZB0 460 aa9.41□□□□□ -0.9
NUP54-215ENST00000514313 CALML6Q8TD86 181 aa9.41□□□□□ -0.9
NUP54-215ENST00000514313 ALG3Q92685 438 aa9.41□□□□□ -0.9
NUP54-215ENST00000514313 TTC17Q96AE7 1141 aa9.41□□□□□ -0.9
NUP54-215ENST00000514313 ACE2Q9BYF1 805 aaPredicted RBP9.41□□□□□ -0.9
NUP54-215ENST00000514313 PDCP20941 246 aa9.4□□□□□ -0.9
NUP54-215ENST00000514313 SLC16A1P53985 500 aa9.4□□□□□ -0.9
NUP54-215ENST00000514313 PFKPQ01813 784 aa9.4□□□□□ -0.9
NUP54-215ENST00000514313 PICALMQ13492 652 aa9.4□□□□□ -0.9
NUP54-215ENST00000514313 ZC3H14Q6PJT7 736 aaKnown RBP9.4□□□□□ -0.9
NUP54-215ENST00000514313 USP45Q70EL2 814 aa9.4□□□□□ -0.9
NUP54-215ENST00000514313 CHST15Q7LFX5 561 aaPredicted RBP9.4□□□□□ -0.9
NUP54-215ENST00000514313 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.4□□□□□ -0.9
NUP54-215ENST00000514313 OR14C36Q8NHC7 312 aa9.4□□□□□ -0.9
NUP54-215ENST00000514313 RPGRQ92834 1020 aaKnown RBP9.4□□□□□ -0.9
NUP54-215ENST00000514313 MVB12AQ96EY5 273 aa9.4□□□□□ -0.9
NUP54-215ENST00000514313 FAM193BQ96PV7 902 aaPredicted RBP9.4□□□□□ -0.9
NUP54-215ENST00000514313 GALNT8Q9NY28 637 aa9.4□□□□□ -0.9
NUP54-215ENST00000514313 USP18Q9UMW8 372 aa9.4□□□□□ -0.9
NUP54-215ENST00000514313 WASF3Q9UPY6 502 aa9.4□□□□□ -0.9
NUP54-215ENST00000514313 OPHN1O60890 802 aa9.39□□□□□ -0.91
NUP54-215ENST00000514313 IFIT2P09913 472 aaKnown RBP9.39□□□□□ -0.91
NUP54-215ENST00000514313 PHKG2P15735 406 aa9.39□□□□□ -0.91
NUP54-215ENST00000514313 ANO4Q32M45 955 aa9.39□□□□□ -0.91
NUP54-215ENST00000514313 VASNQ6EMK4 673 aa9.39□□□□□ -0.91
NUP54-215ENST00000514313 TMC5Q6UXY8 1006 aa9.39□□□□□ -0.91
NUP54-215ENST00000514313 OVCH2Q7RTZ1 564 aa9.39□□□□□ -0.91
NUP54-215ENST00000514313 FAM26EQ8N5C1 309 aa9.39□□□□□ -0.91
NUP54-215ENST00000514313 PPP1R35Q8TAP8 253 aa9.39□□□□□ -0.91
NUP54-215ENST00000514313 PITHD1Q9GZP4 211 aaPredicted RBP9.39□□□□□ -0.91
NUP54-215ENST00000514313 ANO9A1A5B4 782 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 TPP1O14773 563 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 WNT11O96014 354 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 ENO2P09104 434 aaPredicted RBP9.38□□□□□ -0.91
NUP54-215ENST00000514313 RHCEP18577 417 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 ECE1P42892 770 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 BCAR1P56945 870 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 RHDQ02161 417 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 FYB2Q5VWT5 728 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 PRR18Q8N4B5 295 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 FLAD1Q8NFF5 587 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 IGDCC4Q8TDY8 1250 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 RSAD2Q8WXG1 361 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 EVLQ9UI08 416 aaPredicted RBP9.38□□□□□ -0.91
NUP54-215ENST00000514313 PCDHB6Q9Y5E3 794 aa9.38□□□□□ -0.91
NUP54-215ENST00000514313 OR14I1A6ND48 311 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 PMM2O15305 246 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 EDNRBP24530 442 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 PDE6BP35913 854 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 AFMP43652 599 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 NKX3-2P78367 333 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 TMEM62Q0P6H9 643 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 CDYL2Q8N8U2 506 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 NRG4Q8WWG1 115 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 KIRREL1Q96J84 757 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 SLC6A17Q9H1V8 727 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 LIMCH1Q9UPQ0 1083 aa9.37□□□□□ -0.91
NUP54-215ENST00000514313 CCDC154A6NI56 674 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 HTRA2O43464 458 aaPredicted RBP9.36□□□□□ -0.91
NUP54-215ENST00000514313 DTNBO60941 627 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 APEX1P27695 318 aaKnown RBP9.36□□□□□ -0.91
NUP54-215ENST00000514313 ZNF200P98182 395 aaPredicted RBP9.36□□□□□ -0.91
NUP54-215ENST00000514313 MALLQ13021 153 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 VPS72Q15906 364 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 ADRM1Q16186 407 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 SKIDA1Q1XH10 827 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 PGS1Q32NB8 556 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 GAREM2Q75VX8 874 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 TMC6Q7Z403 805 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 CAMKK1Q8N5S9 505 aa9.36□□□□□ -0.91
NUP54-215ENST00000514313 DTX3Q8N9I9 347 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms