RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 TBC1D7Q9P0N9 293 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 PCDHA4Q9UN74 947 aa8.42□□□□□ -1.06
USP4-211ENST00000485450 A6NNZ2 444 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 ADAMTS3O15072 1205 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 MKRN4PQ13434 485 aaPredicted RBP8.41□□□□□ -1.06
USP4-211ENST00000485450 TUBB8Q3ZCM7 444 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 FSIP1Q8NA03 581 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 COG1Q8WTW3 980 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 SAAL1Q96ER3 474 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 KCNMB3Q9NPA1 279 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 PCDHA6Q9UN73 950 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 PCDHA8Q9Y5H6 950 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 KIAA1671Q9BY89 1806 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 CTAGE15A4D2H0 777 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 A6NJR5 290 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 DNM1LO00429 736 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 DHX15O43143 795 aaKnown RBP8.41□□□□□ -1.06
USP4-211ENST00000485450 DUSP11O75319 330 aaKnown RBP8.41□□□□□ -1.06
USP4-211ENST00000485450 MMP1P03956 469 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 CTAGE8P0CG41 777 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 GOLGA8HP0CJ92 632 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 ATP1A3P13637 1013 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 MCM3P25205 808 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 SLC7A5Q01650 507 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 GOLGA8FQ08AF8 430 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 GOLGA8DPQ0D2H9 430 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 WHAMMP3Q1A5X7 153 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 CCDC40Q4G0X9 1142 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 CTAGE6Q86UF2 777 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 CTAGE4Q8IX94 777 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 FAM81AQ8TBF8 368 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 SH3GL2Q99962 352 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 FOXP1Q9H334 677 aaPredicted RBP8.41□□□□□ -1.06
USP4-211ENST00000485450 ZNF510Q9Y2H8 683 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 TMEM98Q9Y2Y6 226 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 AGPSO00116 658 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 MEIS1O00470 390 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 TNPO2O14787 897 aaKnown RBP8.41□□□□□ -1.06
USP4-211ENST00000485450 TBX3O15119 743 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 ADCY3O60266 1144 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 PEX10O60683 326 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 EZRP15311 586 aaKnown RBP8.41□□□□□ -1.06
USP4-211ENST00000485450 ADAM17P78536 824 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 STIM1Q13586 685 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 ZYXQ15942 572 aaKnown RBP8.41□□□□□ -1.06
USP4-211ENST00000485450 TSNAXIP1Q2TAA8 658 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 DUSP28Q4G0W2 176 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 RNF207Q6ZRF8 634 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 ARMCX2Q7L311 632 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 C4orf32Q8N8J7 132 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 SDF4Q9BRK5 362 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 MRPL44Q9H9J2 332 aaKnown RBP8.41□□□□□ -1.06
USP4-211ENST00000485450 GPCPD1Q9NPB8 672 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 ADD3Q9UEY8 706 aaKnown RBP8.41□□□□□ -1.06
USP4-211ENST00000485450 EMSYQ7Z589 1322 aa8.41□□□□□ -1.06
USP4-211ENST00000485450 ZNF202O95125 648 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 INHAP05111 366 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 KCNA2P16389 499 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 IBSPP21815 317 aaPredicted RBP8.4□□□□□ -1.06
USP4-211ENST00000485450 GGCXP38435 758 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 KARSQ15046 597 aaKnown RBP8.4□□□□□ -1.06
USP4-211ENST00000485450 CCL14Q16627 93 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 CCDC148Q8NFR7 591 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 ETNPPLQ8TBG4 499 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 WASF1Q92558 559 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 UBA5Q9GZZ9 404 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 BATF3Q9NR55 127 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 DNAAF2Q9NVR5 837 aaKnown RBP8.4□□□□□ -1.06
USP4-211ENST00000485450 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.4□□□□□ -1.06
USP4-211ENST00000485450 PCDHA1Q9Y5I3 950 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 BIN1O00499 593 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 AHCYL1O43865 530 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 GNGT1P63211 74 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 SNCBQ16143 134 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 MICALCLQ6ZW33 695 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 GET4Q7L5D6 327 aaPredicted RBP8.4□□□□□ -1.06
USP4-211ENST00000485450 TC2NQ8N9U0 490 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 NSUN6Q8TEA1 469 aaKnown RBP8.4□□□□□ -1.06
USP4-211ENST00000485450 RIN2Q8WYP3 895 aaPredicted RBP8.4□□□□□ -1.06
USP4-211ENST00000485450 MRPS27Q92552 414 aaKnown RBP8.4□□□□□ -1.06
USP4-211ENST00000485450 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.4□□□□□ -1.06
USP4-211ENST00000485450 JADE2Q9NQC1 790 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 RGL1Q9NZL6 768 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 SAMM50Q9Y512 469 aa8.4□□□□□ -1.06
USP4-211ENST00000485450 A0A1W2PQ27 194 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 A0A1W2PQ64 194 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 A0A1W2PQD8 194 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 ATP6V1G1O75348 118 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 SGPL1O95470 568 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 SERPINC1P01008 464 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 CCDC175P0C221 793 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 TRAPPC10P48553 1259 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 SKOR1P84550 965 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 CEBPZQ03701 1054 aaKnown RBP8.4□□□□□ -1.07
USP4-211ENST00000485450 ARHGAP1Q07960 439 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 SPIRE1Q08AE8 756 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 DRP2Q13474 957 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 MYBPC3Q14896 1274 aa8.4□□□□□ -1.07
USP4-211ENST00000485450 BZW1Q7L1Q6 419 aaKnown RBP8.4□□□□□ -1.07
USP4-211ENST00000485450 ANKRD33Q7Z3H0 272 aa8.4□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms