RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 MMP1P03956 469 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 NME2P22392 152 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 GSTT1P30711 240 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 ASPAP45381 313 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 BACE1P56817 501 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 KIF23Q02241 960 aaPredicted RBP6.28□□□□□ -1.4
VPS41-211ENST00000466017 PPATQ06203 517 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 SAFBQ15424 915 aaKnown RBP eCLIP6.28□□□□□ -1.4
VPS41-211ENST00000466017 KRT40Q6A162 431 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 RAB11FIP4Q86YS3 637 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 CCDC144CPQ8IYA2 1237 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 LRRC47Q8N1G4 583 aaKnown RBP6.28□□□□□ -1.4
VPS41-211ENST00000466017 TMEM87AQ8NBN3 555 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 CCDC148Q8NFR7 591 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 ACER1Q8TDN7 264 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 RRP36Q96EU6 259 aaKnown RBP6.28□□□□□ -1.4
VPS41-211ENST00000466017 CDCA5Q96FF9 252 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 UBA5Q9GZZ9 404 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 ZMYND12Q9H0C1 365 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 JMJD4Q9H9V9 463 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 PICK1Q9NRD5 415 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 MAP3K20Q9NYL2 800 aaKnown RBP6.28□□□□□ -1.4
VPS41-211ENST00000466017 PRKAG2Q9UGJ0 569 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 RCOR1Q9UKL0 485 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 CFAP45Q9UL16 551 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 U3KQE9 123 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 MYH4Q9Y623 1939 aa6.28□□□□□ -1.4
VPS41-211ENST00000466017 MYPNQ86TC9 1320 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 SCO2A0A1W2PP80 73 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 GOLGA6L22H0YM25 854 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 ZBTB5O15062 677 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 PRPF40AO75400 957 aaKnown RBP6.27□□□□□ -1.41
VPS41-211ENST00000466017 XRCC5P13010 732 aaKnown RBP6.27□□□□□ -1.41
VPS41-211ENST00000466017 GNA11P29992 359 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 GNA15P30679 374 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 HOXA7P31268 230 aaPredicted RBP6.27□□□□□ -1.41
VPS41-211ENST00000466017 ECE1P42892 770 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 TRAPPC10P48553 1259 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 SPP2Q13103 211 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 NPY5RQ15761 445 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 SKOR2Q2VWA4 1001 aaPredicted RBP6.27□□□□□ -1.41
VPS41-211ENST00000466017 EAPPQ56P03 285 aaPredicted RBP6.27□□□□□ -1.41
VPS41-211ENST00000466017 TTBK2Q6IQ55 1244 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.27□□□□□ -1.41
VPS41-211ENST00000466017 ERO1BQ86YB8 467 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 ADGRF4Q8IZF3 695 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 PRPF38AQ8NAV1 312 aaKnown RBP6.27□□□□□ -1.41
VPS41-211ENST00000466017 ZNF396Q96N95 335 aaPredicted RBP6.27□□□□□ -1.41
VPS41-211ENST00000466017 WRNIP1Q96S55 665 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 SCAND2PQ9GZW5 306 aaPredicted RBP6.27□□□□□ -1.41
VPS41-211ENST00000466017 CBX8Q9HC52 389 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 BRMS1Q9HCU9 246 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 ADAMTS5Q9UNA0 930 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 SNCAIPQ9Y6H5 919 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 AK5Q9Y6K8 562 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 SSC5DA1L4H1 1573 aa6.27□□□□□ -1.41
VPS41-211ENST00000466017 ELP1O95163 1332 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 VPS37CA5D8V6 355 aaPredicted RBP6.26□□□□□ -1.41
VPS41-211ENST00000466017 TMEM232C9JQI7 657 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 ADM5C9JUS6 153 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 STXBP3O00186 592 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 ATP2A1O14983 1001 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 YEATS4O95619 227 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 BMP15O95972 392 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 GOLGA8HP0CJ92 632 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 KRT2P35908 639 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 CD97P48960 835 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 NASPP49321 788 aaPredicted RBP6.26□□□□□ -1.41
VPS41-211ENST00000466017 STAT2P52630 851 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 MRPL12P52815 198 aaKnown RBP6.26□□□□□ -1.41
VPS41-211ENST00000466017 OAZ1P54368 228 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 NLRP5P59047 1200 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 KRT85P78386 507 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 ATP2B2Q01814 1243 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 GHRHRQ02643 423 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 ORC2Q13416 577 aaPredicted RBP6.26□□□□□ -1.41
VPS41-211ENST00000466017 INPP5AQ14642 412 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 TTLL4Q14679 1199 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 SHROOM1Q2M3G4 852 aaPredicted RBP6.26□□□□□ -1.41
VPS41-211ENST00000466017 RILPL1Q5EBL4 403 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 KIAA1755Q5JYT7 1200 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 SYDE2Q5VT97 1194 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 PRAMEF18Q5VWM3 479 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 CATSPERGQ6ZRH7 1159 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 KCTD1Q719H9 257 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 C12orf40Q86WS4 652 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 DIS3L2Q8IYB7 885 aaKnown RBP6.26□□□□□ -1.41
VPS41-211ENST00000466017 BLIDQ8IZY5 108 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 BICD2Q8TD16 824 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 ZKSCAN4Q969J2 545 aaPredicted RBP6.26□□□□□ -1.41
VPS41-211ENST00000466017 SHISA4Q96DD7 197 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 PIGSQ96S52 555 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 AMNQ9BXJ7 453 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 GLIS2Q9BZE0 524 aaPredicted RBP6.26□□□□□ -1.41
VPS41-211ENST00000466017 RANBP17Q9H2T7 1088 aaKnown RBP6.26□□□□□ -1.41
VPS41-211ENST00000466017 C6orf50Q9HD87 102 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 LMBRD1Q9NUN5 540 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 HOXC10Q9NYD6 342 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 RTEL1Q9NZ71 1219 aa6.26□□□□□ -1.41
VPS41-211ENST00000466017 FAM8A1Q9UBU6 413 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms