RNA–Protein interactions for RNA: ENST00000360001.10

SDF4-202, Transcript of stromal cell derived factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SDF4, Length 1,956 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-202ENST00000360001 ST6GALNAC4Q9H4F1 302 aa25.54■■□□□ 1.68
SDF4-202ENST00000360001 C17orf75Q9HAS0 396 aa25.54■■□□□ 1.68
SDF4-202ENST00000360001 TGFB1I1O43294 461 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 NCKAP1LP55160 1127 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 RTP1P59025 263 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 FILIP1Q7Z7B0 1213 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 IMPACTQ9P2X3 320 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 N4BP3O15049 544 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 TBC1D8O95759 1140 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 RFC5P40937 340 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 NPTX2P47972 431 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 TNFAIP2Q03169 654 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 ALCAMQ13740 583 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 IKZF4Q9H2S9 585 aa25.53■■□□□ 1.68
SDF4-202ENST00000360001 CALUO43852 315 aaPredicted RBP25.52■■□□□ 1.68
SDF4-202ENST00000360001 LGALS2P05162 132 aa25.52■■□□□ 1.68
SDF4-202ENST00000360001 SPIRE2Q8WWL2 714 aa25.52■■□□□ 1.68
SDF4-202ENST00000360001 SLC7A3Q8WY07 619 aa25.52■■□□□ 1.68
SDF4-202ENST00000360001 TUBGCP2Q9BSJ2 902 aa25.52■■□□□ 1.68
SDF4-202ENST00000360001 POLR3FQ9H1D9 316 aaPredicted RBP25.52■■□□□ 1.68
SDF4-202ENST00000360001 PPME1Q9Y570 386 aa25.52■■□□□ 1.68
SDF4-202ENST00000360001 ZBTB42B2RXF5 422 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 SLC16A4O15374 487 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 PBX1P40424 430 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 GTF2BQ00403 316 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 DMP1Q13316 513 aaPredicted RBP25.51■■□□□ 1.67
SDF4-202ENST00000360001 HAUS6Q7Z4H7 955 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 OR6J1Q8NGC5 347 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 NTPCRQ9BSD7 190 aaKnown RBP25.51■■□□□ 1.67
SDF4-202ENST00000360001 XRCC5P13010 732 aaKnown RBP25.51■■□□□ 1.67
SDF4-202ENST00000360001 HOXD8P13378 290 aaPredicted RBP25.51■■□□□ 1.67
SDF4-202ENST00000360001 NR2F2P24468 414 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 MTIF2P46199 727 aaKnown RBP25.51■■□□□ 1.67
SDF4-202ENST00000360001 ADAM9Q13443 819 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 SLC17A8Q8NDX2 589 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 CFHR5Q9BXR6 569 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 ERAP1Q9NZ08 941 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 GABRQQ9UN88 632 aa25.51■■□□□ 1.67
SDF4-202ENST00000360001 GNEQ9Y223 722 aaKnown RBP25.51■■□□□ 1.67
SDF4-202ENST00000360001 LGALS16A8MUM7 142 aa25.5■■□□□ 1.67
SDF4-202ENST00000360001 CAP1Q01518 475 aa25.5■■□□□ 1.67
SDF4-202ENST00000360001 TMEM161BQ8NDZ6 487 aa25.5■■□□□ 1.67
SDF4-202ENST00000360001 TMEM143Q96AN5 459 aa25.5■■□□□ 1.67
SDF4-202ENST00000360001 ZNF830Q96NB3 372 aaPredicted RBP25.5■■□□□ 1.67
SDF4-202ENST00000360001 CCDC169A6NNP5 214 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 PPFIA4O75335 1185 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 MAFO75444 373 aaPredicted RBP25.49■■□□□ 1.67
SDF4-202ENST00000360001 SMTNP53814 917 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 NFIL3Q16649 462 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 KIFC3Q9BVG8 833 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 RNPEPQ9H4A4 650 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 CETN3O15182 167 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 NR3C1P04150 777 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 MMP3P08254 477 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 ARL2P36404 184 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 MAP2K2P36507 400 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 VEGFBP49765 207 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 MIIPQ5JXC2 388 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 SPECC1LQ69YQ0 1117 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 C16orf70Q9BSU1 422 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 GBP3Q9H0R5 595 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 KMT5AQ9NQR1 393 aa25.49■■□□□ 1.67
SDF4-202ENST00000360001 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP25.49■■□□□ 1.672e-6■■□□□ 12.4
SDF4-202ENST00000360001 HBP1O60381 514 aa25.48■■□□□ 1.67
SDF4-202ENST00000360001 GNA14O95837 355 aa25.48■■□□□ 1.67
SDF4-202ENST00000360001 PRKCSHP14314 528 aaPredicted RBP25.48■■□□□ 1.67
SDF4-202ENST00000360001 SP3Q02447 781 aa25.48■■□□□ 1.67
SDF4-202ENST00000360001 ACCSQ96QU6 501 aa25.48■■□□□ 1.67
SDF4-202ENST00000360001 KCNF1Q9H3M0 494 aa25.48■■□□□ 1.67
SDF4-202ENST00000360001 TMEM206Q9H813 350 aa25.48■■□□□ 1.67
SDF4-202ENST00000360001 TRPC6Q9Y210 931 aa25.48■■□□□ 1.67
SDF4-202ENST00000360001 ADGRA3Q8IWK6 1321 aa25.48■■□□□ 1.67
SDF4-202ENST00000360001 CLIC2O15247 247 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 ZNF286BP0CG31 522 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 MARSP56192 900 aaKnown RBP25.47■■□□□ 1.67
SDF4-202ENST00000360001 TBC1D8BQ0IIM8 1120 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 ARID5BQ14865 1188 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 ASAP3Q8TDY4 903 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 IFT74Q96LB3 600 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 NOC4LQ9BVI4 516 aaKnown RBP25.47■■□□□ 1.67
SDF4-202ENST00000360001 AGPAT3Q9NRZ7 376 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 DYNC1LI2O43237 492 aaPredicted RBP25.47■■□□□ 1.67
SDF4-202ENST00000360001 TRPA1O75762 1119 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 FLT3LGP49771 235 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 TBX2Q13207 712 aaPredicted RBP25.47■■□□□ 1.67
SDF4-202ENST00000360001 HS2ST1Q7LGA3 356 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 RNF186Q9NXI6 227 aa25.47■■□□□ 1.67
SDF4-202ENST00000360001 IGKV6-21A0A0C4DH24 114 aa25.46■■□□□ 1.67
SDF4-202ENST00000360001 GLRA2P23416 452 aa25.46■■□□□ 1.67
SDF4-202ENST00000360001 RPL13P26373 211 aaKnown RBP25.46■■□□□ 1.67
SDF4-202ENST00000360001 GSDMDP57764 484 aa25.46■■□□□ 1.67
SDF4-202ENST00000360001 HTRA3P83110 453 aa25.46■■□□□ 1.67
SDF4-202ENST00000360001 UBXN1Q04323 297 aa25.46■■□□□ 1.67
SDF4-202ENST00000360001 SYCP3Q8IZU3 236 aa25.46■■□□□ 1.67
SDF4-202ENST00000360001 GOLGA5Q8TBA6 731 aa25.46■■□□□ 1.67
SDF4-202ENST00000360001 LENG1Q96BZ8 264 aaPredicted RBP25.46■■□□□ 1.67
SDF4-202ENST00000360001 HVCN1Q96D96 273 aa25.46■■□□□ 1.67
SDF4-202ENST00000360001 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.46■■□□□ 1.67
SDF4-202ENST00000360001 A6NJR5 290 aa25.45■■□□□ 1.67
SDF4-202ENST00000360001 TPM2P07951 284 aa25.45■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms