RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ARHGEF15O94989 841 aa18.17■□□□□ 0.5
TRIM28-206ENST00000595974 U2AF2P26368 475 aaKnown RBP eCLIP18.17■□□□□ 0.5
TRIM28-206ENST00000595974 MCM7P33993 719 aa18.17■□□□□ 0.5
TRIM28-206ENST00000595974 CRYBB1P53674 252 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-206ENST00000595974 KIZQ2M2Z5 673 aa18.17■□□□□ 0.5
TRIM28-206ENST00000595974 ANO5Q75V66 913 aa18.17■□□□□ 0.5
TRIM28-206ENST00000595974 C4orf19Q8IY42 314 aa18.17■□□□□ 0.5
TRIM28-206ENST00000595974 MAFAQ8NHW3 353 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-206ENST00000595974 NEK9Q8TD19 979 aa18.17■□□□□ 0.5
TRIM28-206ENST00000595974 CEP89Q96ST8 783 aa18.17■□□□□ 0.5
TRIM28-206ENST00000595974 JPH2Q9BR39 696 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-206ENST00000595974 NOL7Q9UMY1 257 aaKnown RBP18.17■□□□□ 0.5
TRIM28-206ENST00000595974 PRUNE2Q8WUY3 3088 aa18.17■□□□□ 0.5
TRIM28-206ENST00000595974 TMEM150BA6NC51 233 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 GPR32O75388 356 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 RPS6KA5O75582 802 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 ATP2B1P20020 1258 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 TXKP42681 527 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 TTC38Q5R3I4 469 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 SP7Q8TDD2 431 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-206ENST00000595974 TMEM40Q8WWA1 233 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 LINC01599Q8WXQ3 324 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 YME1L1Q96TA2 773 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 OSMRQ99650 979 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 TSPYL2Q9H2G4 693 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-206ENST00000595974 TMEM60Q9H2L4 133 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 ZSWIM4Q9H7M6 989 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 SUGCTQ9HAC7 445 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 CDHR5Q9HBB8 845 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 ERVK-5Q9HDB9 667 aa18.16■□□□□ 0.5
TRIM28-206ENST00000595974 WRAP73Q9P2S5 460 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-206ENST00000595974 NOC2LQ9Y3T9 749 aaKnown RBP18.16■□□□□ 0.5
TRIM28-206ENST00000595974 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.16■□□□□ 0.5
TRIM28-206ENST00000595974 PRRC2BQ5JSZ5 2229 aaKnown RBP18.16■□□□□ 0.5
TRIM28-206ENST00000595974 IGKV6-21A0A0C4DH24 114 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 LINC01553A4QN01 128 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 ENPP3O14638 875 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 GPR182O15218 404 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 MAFO75444 373 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-206ENST00000595974 UPP2O95045 317 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 GJB2P29033 226 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 DNM2P50570 870 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 NLRP11P59045 1033 aaKnown RBP18.15■□□□□ 0.5
TRIM28-206ENST00000595974 CYP4A11Q02928 519 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 TMEM266Q2M3C6 531 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 PLA2G4FQ68DD2 849 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 DYDC2Q96IM9 177 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 TGS1Q96RS0 853 aaKnown RBP18.15■□□□□ 0.5
TRIM28-206ENST00000595974 PPP1R16BQ96T49 567 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 EIF2AK1Q9BQI3 630 aaKnown RBP18.15■□□□□ 0.5
TRIM28-206ENST00000595974 CYP26B1Q9NR63 512 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 RGL1Q9NZL6 768 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 SMC3Q9UQE7 1217 aa18.15■□□□□ 0.5
TRIM28-206ENST00000595974 OR52Z1P0C646 297 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 YWHABP31946 246 aaKnown RBP18.14■□□□□ 0.49
TRIM28-206ENST00000595974 GPC3P51654 580 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 CDC42EP1Q00587 391 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 NFX1Q12986 1120 aaKnown RBP18.14■□□□□ 0.49
TRIM28-206ENST00000595974 ADGRE1Q14246 886 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 OTUD6AQ7L8S5 288 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 FAM228AQ86W67 206 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 EXOC8Q8IYI6 725 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 SLC7A3Q8WY07 619 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 ARNTL2Q8WYA1 636 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 CEP170P1Q96L14 293 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 SH2D3AQ9BRG2 576 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 ADAMTS10Q9H324 1103 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 TMX1Q9H3N1 280 aa18.14■□□□□ 0.49
TRIM28-206ENST00000595974 LYPLA2O95372 231 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 RFC5P40937 340 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 NPEPPSP55786 919 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 ERVK-21P61565 698 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 CTTNQ14247 550 aaKnown RBP18.13■□□□□ 0.49
TRIM28-206ENST00000595974 ZNF174Q15697 407 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 NPAS4Q8IUM7 802 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 TPH2Q8IWU9 490 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 SCLT1Q96NL6 688 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 HSD17B14Q9BPX1 270 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 CERS4Q9HA82 394 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 ST3GAL5Q9UNP4 418 aa18.13■□□□□ 0.49
TRIM28-206ENST00000595974 FNDC1Q4ZHG4 1894 aaPredicted RBP18.13■□□□□ 0.49
TRIM28-206ENST00000595974 KIAA1671Q9BY89 1806 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 EPOPA6NHQ4 379 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 POTEMA6NI47 508 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 H3BQV1 296 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 GAS2O43903 313 aaKnown RBP18.12■□□□□ 0.49
TRIM28-206ENST00000595974 SLITRK3O94933 977 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 STAG3L1P0CL83 205 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 EIF4BP23588 611 aaKnown RBP18.12■□□□□ 0.49
TRIM28-206ENST00000595974 POLGP54098 1239 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-206ENST00000595974 DRP2Q13474 957 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 CUL4AQ13619 759 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 SPRED2Q7Z698 418 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 RTN4RL1Q86UN2 441 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-206ENST00000595974 NLRP7Q8WX94 980 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 SAMD11Q96NU1 681 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 DHX33Q9H6R0 707 aaKnown RBP18.12■□□□□ 0.49
TRIM28-206ENST00000595974 RC3H2Q9HBD1 1191 aaKnown RBP18.12■□□□□ 0.49
TRIM28-206ENST00000595974 C1orf112Q9NSG2 853 aa18.12■□□□□ 0.49
TRIM28-206ENST00000595974 RNF216Q9NWF9 866 aaPredicted RBP18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms