RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 JAM2P57087 298 aa20.28■□□□□ 0.84
PRPF40B-208ENST00000548436 MAPK7Q13164 816 aa20.28■□□□□ 0.84
PRPF40B-208ENST00000548436 DAW1Q8N136 415 aa20.28■□□□□ 0.84
PRPF40B-208ENST00000548436 FBXL5Q9UKA1 691 aa20.28■□□□□ 0.84
PRPF40B-208ENST00000548436 UBE4BO95155 1302 aa20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 GTPBP10A4D1E9 387 aaKnown RBP20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 ARHGEF35A5YM69 484 aa20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 HIP1RO75146 1068 aa20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 MYBL2P10244 700 aa20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 ALAS1P13196 640 aa20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 MUM1L1Q5H9M0 696 aa20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 MIER3Q7Z3K6 550 aa20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 RAVER2Q9HCJ3 691 aaKnown RBP20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 AGPAT3Q9NRZ7 376 aa20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 DMAC2Q9NW81 257 aa20.27■□□□□ 0.84
PRPF40B-208ENST00000548436 N4BP1O75113 896 aaKnown RBP20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 PRKCIP41743 596 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 MRPS9P82933 396 aaKnown RBP20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 ITGB3BPQ13352 177 aaPredicted RBP20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 LPAR1Q92633 364 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 LRRC1Q9BTT6 524 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 STRA6Q9BX79 667 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 KIAA1683Q9H0B3 1180 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 HOMER2Q9NSB8 354 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 PIM2Q9P1W9 311 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 PCDHGC5Q9Y5F6 944 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 BZW2Q9Y6E2 419 aaKnown RBP20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 FTCDO95954 541 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 CYP2J2P51589 502 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 GYS2P54840 703 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 GHRHRQ02643 423 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 TKFCQ3LXA3 575 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 CCNI2Q6ZMN8 369 aaPredicted RBP20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 GSPT2Q8IYD1 628 aaKnown RBP20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 NEK9Q8TD19 979 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 HDAC7Q8WUI4 952 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 MS4A14Q96JA4 679 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 HINFPQ9BQA5 517 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 MKNK1Q9BUB5 465 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 SLC38A10Q9HBR0 1119 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 AGO4Q9HCK5 861 aaKnown RBP20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 UBIAD1Q9Y5Z9 338 aa20.26■□□□□ 0.83
PRPF40B-208ENST00000548436 PARP14Q460N5 1801 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 EIF3JO75822 258 aaKnown RBP20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 PPP1R37O75864 691 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 CCDC181Q5TID7 509 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 PADI6Q6TGC4 694 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 STXBP4Q6ZWJ1 553 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 HS2ST1Q7LGA3 356 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 NIPA1Q7RTP0 329 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 DNAAF5Q86Y56 855 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 MCF2L2Q86YR7 1114 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 SYTL5Q8TDW5 730 aaPredicted RBP20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 TSKSQ9UJT2 592 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 P4HBP07237 508 aaKnown RBP20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 MATR3P43243 847 aaKnown RBP eCLIP20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 FMO5P49326 533 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 GPS2Q13227 327 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 MAP9Q49MG5 647 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 PCNX4Q63HM2 1172 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 MAEAQ7L5Y9 396 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 NAGPAQ9UK23 515 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 ZHX2Q9Y6X8 837 aa20.25■□□□□ 0.83
PRPF40B-208ENST00000548436 GRID2IPA4D2P6 1211 aa20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 PPP1R12BO60237 982 aaPredicted RBP20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 CYP2C19P33261 490 aa20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 ZNF280AP59817 542 aaPredicted RBP20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 MRPS25P82663 173 aaKnown RBP20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 C10orf76Q5T2E6 689 aa20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 MEI1Q5TIA1 1274 aa20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 SLC16A10Q8TF71 515 aa20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 JDP2Q8WYK2 163 aa20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 TAAR1Q96RJ0 339 aa20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 TAOK3Q9H2K8 898 aa20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 DMGDHQ9UI17 866 aaKnown RBP20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 BRCA1P38398 1863 aaKnown RBP20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 ASTN2O75129 1339 aaPredicted RBP20.24■□□□□ 0.83
PRPF40B-208ENST00000548436 BTNL10A8MVZ5 291 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 PAFAH1B1P43034 410 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 PLS1Q14651 629 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 CBWD6Q4V339 395 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 CBWD3Q5JTY5 395 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 CBWD5Q5RIA9 395 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 NENFQ9UMX5 172 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 PACSIN2Q9UNF0 486 aaPredicted RBP20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 FLOT1O75955 427 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 TNNT3P45378 269 aaPredicted RBP20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 DNA2P51530 1060 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 SPP2Q13103 211 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 CCDC70Q6NSX1 233 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 ALKBH5Q6P6C2 394 aaKnown RBP20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 GDAP1L1Q96MZ0 367 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 RBM12Q9NTZ6 932 aaKnown RBP20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 FRMD4BQ9Y2L6 1034 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 WDR81Q562E7 1941 aa20.23■□□□□ 0.83
PRPF40B-208ENST00000548436 CTNND1O60716 968 aaKnown RBP20.22■□□□□ 0.83
PRPF40B-208ENST00000548436 TRIM49P0CI25 452 aa20.22■□□□□ 0.83
PRPF40B-208ENST00000548436 TRIM49CP0CI26 452 aa20.22■□□□□ 0.83
PRPF40B-208ENST00000548436 VCAM1P19320 739 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms