RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 ITPK1Q13572 414 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PTK2BQ14289 1009 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MXD4Q14582 209 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 DCAF4L1Q3SXM0 396 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 LONRF3Q496Y0 759 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CCDC184Q52MB2 194 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CNGA4Q8IV77 575 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TEX2Q8IWB9 1127 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SMC5Q8IY18 1101 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 C7orf61Q8IZ16 206 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 FIBCD1Q8N539 461 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TDRD7Q8NHU6 1098 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CCDC110Q8TBZ0 833 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PDCD6IPQ8WUM4 868 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 IQCDQ96DY2 449 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TRIM11Q96F44 468 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ZNF274Q96GC6 653 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 FAM84BQ96KN1 310 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 RNPC3Q96LT9 517 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 AK8Q96MA6 479 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ISCA1Q9BUE6 129 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MAGEF1Q9HAY2 307 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ZBTB40Q9NUA8 1239 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 KANSL3Q9P2N6 904 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CTNND2Q9UQB3 1225 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 LAMC1P11047 1609 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 H7C0C1 242 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MAFGO15525 162 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ACTN4O43707 911 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PRKAB2O43741 272 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ALDH2P05091 517 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ERCC3P19447 782 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PCSK1P29120 753 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 DEKP35659 375 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PSMC2P35998 433 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ATP5OP48047 213 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 EPHB3P54753 998 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PEX3P56589 373 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MAP2K5Q13163 448 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TRIM14Q14142 442 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 XKR3Q5GH77 459 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TMTC4Q5T4D3 741 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CDC42EP5Q6NZY7 148 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TOGARAM2Q6ZUX3 1019 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 BZW1Q7L1Q6 419 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PLEKHM2Q8IWE5 1019 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 HS6ST3Q8IZP7 471 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CMTR1Q8N1G2 835 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SLC44A5Q8NCS7 719 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SLAIN1Q8ND83 568 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 FBF1Q8TES7 1133 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 KIF12Q96FN5 646 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 FAM20AQ96MK3 541 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TSGA10Q9BZW7 698 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 GDPD2Q9HCC8 539 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SUCLA2Q9P2R7 463 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 STK17AQ9UEE5 414 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PCDHB6Q9Y5E3 794 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CD163L1Q9NR16 1453 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 DYNC1I1O14576 645 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TLL1O43897 1013 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ATP2C2O75185 946 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 GSTA1P08263 222 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 GSTA2P09210 222 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ABCB4P21439 1286 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PMLP29590 882 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ATICP31939 592 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 HSPA4P34932 840 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CTNNB1P35222 781 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 LONP1P36776 959 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MCAMP43121 646 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 GPC3P51654 580 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 BACE1P56817 501 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 KCNH2Q12809 1159 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 C20orf194Q5TEA3 1177 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SFMBT2Q5VUG0 894 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 XRRA1Q6P2D8 792 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ITIH5Q86UX2 942 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TRIM48Q8IWZ4 208 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 SYCE1Q8N0S2 351 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 MLKLQ8NB16 471 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 RNF149Q8NC42 400 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 NSUN7Q8NE18 718 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 RPGRIP1Q96KN7 1286 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TIGD1Q96MW7 591 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 PLCD4Q9BRC7 762 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ABHD16BQ9H3Z7 469 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CUEDC2Q9H467 287 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 ABCF3Q9NUQ8 709 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 GPRC5DQ9NZD1 345 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 NYAP2Q9P242 653 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 DBR1Q9UK59 544 aaKnown RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 TRIM35Q9UPQ4 493 aa3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 V9GYY5 206 aaPredicted RBP3.17□□□□□ -1.9
SMCHD1-203ENST00000577880 CPDO75976 1380 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 TBKBP1A7MCY6 615 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 A8MXQ7 604 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 GOLGA8SH3BPF8 625 aa3.16□□□□□ -1.9
SMCHD1-203ENST00000577880 HSF2BPO75031 334 aa3.16□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms