RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 CCDC6Q16204 474 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 CTC1Q2NKJ3 1217 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 RILPL1Q5EBL4 403 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 SPRYD7Q5W111 196 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 TMEM139Q8IV31 216 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 CCDC170Q8IYT3 715 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 RSRC1Q96IZ7 334 aaKnown RBP6.03□□□□□ -1.44
LIMA1-203ENST00000547825 TSG101Q99816 390 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 EFR3BQ9Y2G0 817 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 RIPOR2Q9Y4F9 1068 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 A0A087WUV0 522 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-203ENST00000547825 CEP104O60308 925 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 XYLBO75191 536 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 ZFYP08048 801 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-203ENST00000547825 ATP5JP18859 108 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 POLD1P28340 1107 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 GUCY2DQ02846 1103 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 GRIN2CQ14957 1233 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 SLC39A14Q15043 492 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 KRT71Q3SY84 523 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 LRRC24Q50LG9 513 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 TRIM68Q6AZZ1 485 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 TRIM65Q6PJ69 517 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 SARM1Q6SZW1 724 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 TADA2BQ86TJ2 420 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 TCP11Q8WWU5 503 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 EAF1Q96JC9 268 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-203ENST00000547825 METTL22Q9BUU2 404 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-203ENST00000547825 VPS33BQ9H267 617 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 RNF41Q9H4P4 317 aaPredicted RBP6.03□□□□□ -1.44
LIMA1-203ENST00000547825 FAM169AQ9Y6X4 670 aa6.03□□□□□ -1.44
LIMA1-203ENST00000547825 FOXO4P98177 505 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 TTF1Q15361 905 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 RRAGAQ7L523 313 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 DYMQ7RTS9 669 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 ARFGAP2Q8N6H7 521 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 ANKS4BQ8N8V4 417 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 PSMD1Q99460 953 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 IFIH1Q9BYX4 1025 aaKnown RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 MED4Q9NPJ6 270 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 HELLSQ9NRZ9 838 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 RMND1Q9NWS8 449 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 UBP1Q9NZI7 540 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 TBC1D7Q9P0N9 293 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 ODF2LQ9ULJ1 636 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 PPFIA4O75335 1185 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 H2AFXP16104 143 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 IGHMBP2P38935 993 aaKnown RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 IFNAR2P48551 515 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 ARSDP51689 593 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 WHAMMP3Q1A5X7 153 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 PARP10Q53GL7 1025 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 GNASQ5JWF2 1037 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 ZNF697Q5TEC3 545 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 NAA35Q5VZE5 725 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 PDE12Q6L8Q7 609 aaKnown RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 FBXL19Q6PCT2 694 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 KRT25Q7Z3Z0 450 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 VPS36Q86VN1 386 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 EFCAB13Q8IY85 973 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 FMR1NBQ8N0W7 255 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 N4BP2L2Q92802 583 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 SHISA4Q96DD7 197 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 CALML4Q96GE6 196 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 PUS3Q9BZE2 481 aaKnown RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 POLMQ9NP87 494 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 GINM1Q9NU53 330 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 A0A1W2PQ27 194 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 A0A1W2PQ64 194 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 A0A1W2PQD8 194 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 EYA2O00167 538 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 TRAF5O00463 557 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 FGFR1OPO95684 399 aaKnown RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 PCK1P35558 622 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 KRT2P35908 639 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 CRKP46108 304 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 TUBB4BP68371 445 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 EXOSC10Q01780 885 aaKnown RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 CCDC85BQ15834 202 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 LETM2Q2VYF4 491 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 RABL6Q3YEC7 729 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 FOXR1Q6PIV2 292 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 XKR5Q6UX68 686 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 DTHD1Q6ZMT9 781 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 FOXP4Q8IVH2 680 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 NOSTRINQ8IVI9 506 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 TEX11Q8IYF3 940 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 ESR2Q92731 530 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 ZNF274Q96GC6 653 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 EPSTI1Q96J88 318 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 FRMD6Q96NE9 622 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 CSRNP2Q9H175 543 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 ALDH8A1Q9H2A2 487 aaPredicted RBP6.02□□□□□ -1.45
LIMA1-203ENST00000547825 GPAMQ9HCL2 828 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 TFR2Q9UP52 801 aa6.02□□□□□ -1.45
LIMA1-203ENST00000547825 ESYT3A0FGR9 886 aa6.01□□□□□ -1.45
LIMA1-203ENST00000547825 KCNJ18B7U540 433 aa6.01□□□□□ -1.45
LIMA1-203ENST00000547825 FZD9O00144 591 aa6.01□□□□□ -1.45
LIMA1-203ENST00000547825 ATP8B1O43520 1251 aa6.01□□□□□ -1.45
LIMA1-203ENST00000547825 ARHGAP25P42331 645 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 178.7 ms