RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 UGT8Q16880 541 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 RRP12Q5JTH9 1297 aaKnown RBP9.54□□□□□ -0.88
NUP54-215ENST00000514313 KCNK18Q7Z418 384 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 EXOC8Q8IYI6 725 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 LILRA2Q8N149 483 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 HIPK4Q8NE63 616 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 MORC4Q8TE76 937 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 PEX11GQ96HA9 241 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 NMRK2Q9NPI5 230 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 ASB1Q9Y576 335 aa9.54□□□□□ -0.88
NUP54-215ENST00000514313 LOC102724159A0A0B4J2E5 919 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 ERC2O15083 957 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 CYBBP04839 570 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 LPLP06858 475 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 FURINP09958 794 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 AOAHP28039 575 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 HDAC1Q13547 482 aaPredicted RBP9.53□□□□□ -0.88
NUP54-215ENST00000514313 GBX1Q14549 363 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 PWP2Q15269 919 aaKnown RBP9.53□□□□□ -0.88
NUP54-215ENST00000514313 ARHGAP29Q52LW3 1261 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 PITRM1Q5JRX3 1037 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 IFIT1BQ5T764 474 aaKnown RBP9.53□□□□□ -0.88
NUP54-215ENST00000514313 SSH1Q8WYL5 1049 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 FERMT2Q96AC1 680 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 SLC2A13Q96QE2 648 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 TUBGCP5Q96RT8 1024 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 MYL10Q9BUA6 226 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 SEMA6BQ9H3T3 888 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 PRDM12Q9H4Q4 367 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 MYH16Q9H6N6 1097 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 BTBD7Q9P203 1132 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 DDX20Q9UHI6 824 aaKnown RBP9.53□□□□□ -0.88
NUP54-215ENST00000514313 KCNG1Q9UIX4 513 aa9.53□□□□□ -0.88
NUP54-215ENST00000514313 PRSS38A1L453 326 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 F8W031 263 aaPredicted RBP9.52□□□□□ -0.89
NUP54-215ENST00000514313 GOLGA6L22H0YM25 854 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 PRLP01236 227 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 HSPA6P17066 643 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 MC4RP32245 332 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 MYBPC3Q14896 1274 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 TTC38Q5R3I4 469 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 GORABQ5T7V8 394 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 PAQR3Q6TCH7 311 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 B3GNT9Q6UX72 402 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 MYLIPQ8WY64 445 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 RUNDC1Q96C34 613 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 SLC12A5Q9H2X9 1139 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 TUBD1Q9UJT1 453 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 RCAN3Q9UKA8 241 aa9.52□□□□□ -0.89
NUP54-215ENST00000514313 ANGEL1Q9UNK9 670 aaKnown RBP9.52□□□□□ -0.89
NUP54-215ENST00000514313 PRAMEF22A3QJZ6 481 aa9.51□□□□□ -0.89
NUP54-215ENST00000514313 PRPF6O94906 941 aaKnown RBP9.51□□□□□ -0.89
NUP54-215ENST00000514313 APOL3O95236 402 aa9.51□□□□□ -0.89
NUP54-215ENST00000514313 SDHBP21912 280 aa9.51□□□□□ -0.89
NUP54-215ENST00000514313 THBS2P35442 1172 aa9.51□□□□□ -0.89
NUP54-215ENST00000514313 CD97P48960 835 aa9.51□□□□□ -0.89
NUP54-215ENST00000514313 PURAQ00577 322 aaKnown RBP9.51□□□□□ -0.89
NUP54-215ENST00000514313 SNX17Q15036 470 aa9.51□□□□□ -0.89
NUP54-215ENST00000514313 PRAMEF18Q5VWM3 479 aa9.51□□□□□ -0.89
NUP54-215ENST00000514313 PRAMEF9Q5VWM5 478 aa9.51□□□□□ -0.89
NUP54-215ENST00000514313 MPHOSPH6Q99547 160 aaKnown RBP9.51□□□□□ -0.89
NUP54-215ENST00000514313 CSRNP2Q9H175 543 aa9.51□□□□□ -0.89
NUP54-215ENST00000514313 HCFC2Q9Y5Z7 792 aa9.51□□□□□ -0.89
NUP54-215ENST00000514313 KIAA1324LA8MWY0 1029 aaPredicted RBP9.5□□□□□ -0.89
NUP54-215ENST00000514313 NDUFS2O75306 463 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 TRIM27P14373 513 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 RAC2P15153 192 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 AKAP5P24588 427 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 SSTR4P31391 388 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 ADKP55263 362 aaKnown RBP9.5□□□□□ -0.89
NUP54-215ENST00000514313 MRPS9P82933 396 aaKnown RBP9.5□□□□□ -0.89
NUP54-215ENST00000514313 DBPQ10586 325 aaPredicted RBP9.5□□□□□ -0.89
NUP54-215ENST00000514313 GALEQ14376 348 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 ZNF267Q14586 743 aaPredicted RBP9.5□□□□□ -0.89
NUP54-215ENST00000514313 PLCL1Q15111 1095 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 CATIPQ7Z7H3 387 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 E2F7Q96AV8 911 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 MAML3Q96JK9 1138 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 TAAR9Q96RI9 348 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 KCTD10Q9H3F6 313 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 MBNL3Q9NUK0 354 aaKnown RBP9.5□□□□□ -0.89
NUP54-215ENST00000514313 DTLQ9NZJ0 730 aa9.5□□□□□ -0.89
NUP54-215ENST00000514313 SAP30BPQ9UHR5 308 aaKnown RBP9.5□□□□□ -0.89
NUP54-215ENST00000514313 DBR1Q9UK59 544 aaKnown RBP9.5□□□□□ -0.89
NUP54-215ENST00000514313 NUDT19A8MXV4 375 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 AP1G1O43747 822 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 MPIG6BO95866 241 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 RNASE1P07998 156 aaKnown RBP9.49□□□□□ -0.89
NUP54-215ENST00000514313 ERVFRD-1P60508 538 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 SLC6A3Q01959 620 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 ALDH6A1Q02252 535 aaKnown RBP9.49□□□□□ -0.89
NUP54-215ENST00000514313 TIGD7Q6NT04 549 aaPredicted RBP9.49□□□□□ -0.89
NUP54-215ENST00000514313 UNQ6494/PRO21346Q6UXR6 183 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 MIER2Q8N344 545 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 FOXB1Q99853 325 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 SARGQ9BW04 601 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 GTPBP4Q9BZE4 634 aaKnown RBP9.49□□□□□ -0.89
NUP54-215ENST00000514313 RNF32Q9H0A6 362 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 UCKL1Q9NWZ5 548 aa9.49□□□□□ -0.89
NUP54-215ENST00000514313 SERPINB13Q9UIV8 391 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms