RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 APBA2Q99767 749 aa29.74■■■□□ 2.35
MSX1-201ENST00000382723 TRIM49BA6NDI0 452 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 ATP4AP20648 1035 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 ARHGAP1Q07960 439 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 TPD52L1Q16890 204 aaPredicted RBP29.73■■■□□ 2.35
MSX1-201ENST00000382723 FAM160B1Q5W0V3 765 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 DHTKD1Q96HY7 919 aaPredicted RBP29.73■■■□□ 2.35
MSX1-201ENST00000382723 TRIM5Q9C035 493 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 HIP1RO75146 1068 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 TRPA1O75762 1119 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 GH1P01241 217 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 ATP1A3P13637 1013 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 CYP2C19P33261 490 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 STAT5BP51692 787 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 PMS1P54277 932 aaKnown RBP29.73■■■□□ 2.35
MSX1-201ENST00000382723 COBLL1Q53SF7 1204 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 XKR3Q5GH77 459 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 MYCT1Q8N699 235 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 AZI2Q9H6S1 392 aa29.73■■■□□ 2.35
MSX1-201ENST00000382723 SAMSN1Q9NSI8 373 aaKnown RBP29.73■■■□□ 2.35
MSX1-201ENST00000382723 PPP1R2P41236 205 aa29.72■■■□□ 2.35
MSX1-201ENST00000382723 PARVGQ9HBI0 331 aa29.72■■■□□ 2.35
MSX1-201ENST00000382723 ODF2LQ9ULJ1 636 aa29.72■■■□□ 2.35
MSX1-201ENST00000382723 OATP04181 439 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 GAP43P17677 238 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 LAMC2Q13753 1193 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 CCDC144BQ3MJ40 725 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 GLG1Q92896 1179 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 SMPD1P17405 629 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 MAP2K2P36507 400 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 TRIM50Q86XT4 487 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 MYOCDQ8IZQ8 938 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 GUF1Q8N442 669 aaKnown RBP29.71■■■□□ 2.35
MSX1-201ENST00000382723 P2RX5Q93086 422 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 RNF186Q9NXI6 227 aa29.71■■■□□ 2.35
MSX1-201ENST00000382723 CCDC173Q0VFZ6 552 aa29.7■■■□□ 2.34
MSX1-201ENST00000382723 OLFML2BQ68BL8 750 aa29.7■■■□□ 2.34
MSX1-201ENST00000382723 AFAP1L1Q8TED9 768 aa29.7■■■□□ 2.34
MSX1-201ENST00000382723 MRPL44Q9H9J2 332 aaKnown RBP29.7■■■□□ 2.34
MSX1-201ENST00000382723 CYP26B1Q9NR63 512 aa29.7■■■□□ 2.34
MSX1-201ENST00000382723 DOCK3Q8IZD9 2030 aa29.7■■■□□ 2.34
MSX1-201ENST00000382723 CCNE1P24864 410 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 MAPK7Q13164 816 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 MTERF2Q49AM1 385 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 IQSEC1Q6DN90 963 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 SARM1Q6SZW1 724 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 DAW1Q8N136 415 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 GABRQQ9UN88 632 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 MARK3P27448 753 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 CASP5P51878 434 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 SP3Q02447 781 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 DUSP28Q4G0W2 176 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 SEMA6BQ9H3T3 888 aa29.69■■■□□ 2.34
MSX1-201ENST00000382723 LGR5O75473 907 aa29.68■■■□□ 2.34
MSX1-201ENST00000382723 CDK11BP21127 795 aaKnown RBP29.68■■■□□ 2.34
MSX1-201ENST00000382723 ZNF131P52739 623 aa29.68■■■□□ 2.34
MSX1-201ENST00000382723 ANKRD40Q6AI12 368 aa29.68■■■□□ 2.34
MSX1-201ENST00000382723 GPRC5CQ9NQ84 441 aa29.68■■■□□ 2.34
MSX1-201ENST00000382723 LOXHD1Q8IVV2 1947 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 ZNF75DP51815 510 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 TNFAIP2Q03169 654 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 ODR4Q5SWX8 454 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 FAM102BQ5T8I3 360 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 TTI2Q6NXR4 508 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 NELFCDQ8IXH7 590 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 AFG1LQ8WV93 481 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 SCFD1Q8WVM8 642 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 BICDL2A1A5D9 508 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 ADCY6O43306 1168 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 GCNT3O95395 438 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 MYBP10242 640 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 ZNF18P17022 549 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 KIF22Q14807 665 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 OLFML3Q9NRN5 406 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 NRBP2Q9NSY0 501 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 ZSWIM8A7E2V4 1837 aa29.67■■■□□ 2.34
MSX1-201ENST00000382723 FLT3LGP49771 235 aa29.66■■■□□ 2.34
MSX1-201ENST00000382723 FANCCQ00597 558 aa29.66■■■□□ 2.34
MSX1-201ENST00000382723 CAP1Q01518 475 aa29.66■■■□□ 2.34
MSX1-201ENST00000382723 CENPPQ6IPU0 288 aa29.66■■■□□ 2.34
MSX1-201ENST00000382723 OR6J1Q8NGC5 347 aa29.66■■■□□ 2.34
MSX1-201ENST00000382723 PPTC7Q8NI37 304 aa29.66■■■□□ 2.34
MSX1-201ENST00000382723 EMID1Q96A84 441 aaPredicted RBP29.66■■■□□ 2.34
MSX1-201ENST00000382723 PDLIM2Q96JY6 352 aa29.66■■■□□ 2.34
MSX1-201ENST00000382723 PPP1R9BQ96SB3 815 aa29.66■■■□□ 2.34
MSX1-201ENST00000382723 SEL1LQ9UBV2 794 aa29.66■■■□□ 2.34
MSX1-201ENST00000382723 SERPINC1P01008 464 aa29.65■■■□□ 2.34
MSX1-201ENST00000382723 ZNF865P0CJ78 1059 aaPredicted RBP29.65■■■□□ 2.34
MSX1-201ENST00000382723 NMT1P30419 496 aaKnown RBP29.65■■■□□ 2.34
MSX1-201ENST00000382723 FAM178BQ8IXR5 827 aa29.65■■■□□ 2.34
MSX1-201ENST00000382723 DUSP9Q99956 384 aaKnown RBP29.65■■■□□ 2.34
MSX1-201ENST00000382723 TIPINQ9BVW5 301 aa29.65■■■□□ 2.34
MSX1-201ENST00000382723 IFNKQ9P0W0 207 aa29.65■■■□□ 2.34
MSX1-201ENST00000382723 EMSYQ7Z589 1322 aa29.65■■■□□ 2.34
MSX1-201ENST00000382723 DGAT1O75907 488 aa29.65■■■□□ 2.34
MSX1-201ENST00000382723 PRKCZQ05513 592 aa29.65■■■□□ 2.34
MSX1-201ENST00000382723 PLPPR4Q7Z2D5 763 aa29.65■■■□□ 2.34
MSX1-201ENST00000382723 DRC1Q96MC2 740 aa29.65■■■□□ 2.34
MSX1-201ENST00000382723 NIFKQ9BYG3 293 aaKnown RBP29.65■■■□□ 2.34
MSX1-201ENST00000382723 KIF20AO95235 890 aa29.64■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms