RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 KIF20AO95235 890 aa15.23■□□□□ 0.03
PTPRF-202ENST00000372405 UBA1P22314 1058 aaKnown RBP15.23■□□□□ 0.03
PTPRF-202ENST00000372405 MAEAQ7L5Y9 396 aa15.23■□□□□ 0.03
PTPRF-202ENST00000372405 SHCBP1Q8NEM2 672 aa15.23■□□□□ 0.03
PTPRF-202ENST00000372405 NOC4LQ9BVI4 516 aaKnown RBP15.23■□□□□ 0.03
PTPRF-202ENST00000372405 TRAF3IP3Q9Y228 551 aa15.23■□□□□ 0.03
PTPRF-202ENST00000372405 A0A1W2PQC6 194 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 RASSF10A6NK89 507 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 USO1O60763 962 aaKnown RBP15.22■□□□□ 0.03
PTPRF-202ENST00000372405 CASP14P31944 242 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 DNM2P50570 870 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 KCTD2Q14681 263 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 EDRF1Q3B7T1 1238 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 SWSAP1Q6NVH7 229 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 EEPD1Q7L9B9 569 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 ZNF720Q7Z2F6 126 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 ANKRD23Q86SG2 305 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 KSR1Q8IVT5 923 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 ANKRD13CQ8N6S4 541 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 SMCR8Q8TEV9 937 aaPredicted RBP15.22■□□□□ 0.03
PTPRF-202ENST00000372405 CPLX3Q8WVH0 158 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 CEP63Q96MT8 703 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 STRA6Q9BX79 667 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 ANKEF1Q9NU02 776 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 SEL1LQ9UBV2 794 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 SYNGAP1Q96PV0 1343 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 AKR1B15C9JRZ8 316 aaPredicted RBP15.22■□□□□ 0.03
PTPRF-202ENST00000372405 PES1O00541 588 aaKnown RBP15.22■□□□□ 0.03
PTPRF-202ENST00000372405 EIF3DO15371 548 aaKnown RBP eCLIP15.22■□□□□ 0.03
PTPRF-202ENST00000372405 TGFB1I1O43294 461 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 MFAP3LO75121 409 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 ATG7O95352 703 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 FGFR1OPO95684 399 aaKnown RBP15.22■□□□□ 0.03
PTPRF-202ENST00000372405 PSAPP07602 524 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 ZBTB48P10074 688 aaPredicted RBP15.22■□□□□ 0.03
PTPRF-202ENST00000372405 ODR4Q5SWX8 454 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 WDR78Q5VTH9 848 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 E4F1Q66K89 784 aaPredicted RBP15.22■□□□□ 0.03
PTPRF-202ENST00000372405 PPP4R3CPQ6ZMV5 832 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 GPRC5AQ8NFJ5 357 aa15.22■□□□□ 0.03
PTPRF-202ENST00000372405 PDXKO00764 312 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 OFD1O75665 1012 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 PPP1R37O75864 691 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 ARIH2O95376 493 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 SUPT20HL2P0C7V6 817 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 KLK7P49862 253 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 MAN2A1Q16706 1144 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 VWA3BQ502W6 1294 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 XKR9Q5GH70 373 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 PPFIBP1Q86W92 1011 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 FAM178BQ8IXR5 827 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 CCDC112Q8NEF3 446 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 GTF3C2Q8WUA4 911 aaPredicted RBP15.21■□□□□ 0.03
PTPRF-202ENST00000372405 GPRC5CQ9NQ84 441 aa15.21■□□□□ 0.03
PTPRF-202ENST00000372405 IGSF9BQ9UPX0 1349 aa15.21■□□□□ 0.02
PTPRF-202ENST00000372405 FARP2O94887 1054 aaPredicted RBP15.2■□□□□ 0.02
PTPRF-202ENST00000372405 ATP4AP20648 1035 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 NR2F2P24468 414 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 MARSP56192 900 aaKnown RBP15.2■□□□□ 0.02
PTPRF-202ENST00000372405 TBC1D8BQ0IIM8 1120 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 ADAM9Q13443 819 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 ATP6V0A1Q93050 837 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 PANX2Q96RD6 677 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 NDST4Q9H3R1 872 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 KCND1Q9NSA2 647 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 TYW1Q9NV66 732 aaKnown RBP15.2■□□□□ 0.02
PTPRF-202ENST00000372405 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.2■□□□□ 0.02
PTPRF-202ENST00000372405 KCNJ6P48051 423 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 PRKCEQ02156 737 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 SYCP1Q15431 976 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 LY6KQ17RY6 165 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 CCAR2Q8N163 923 aaKnown RBP15.2■□□□□ 0.02
PTPRF-202ENST00000372405 MORC4Q8TE76 937 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 ERGIC2Q96RQ1 377 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 BAG1Q99933 345 aaPredicted RBP15.2■□□□□ 0.02
PTPRF-202ENST00000372405 TTYH3Q9C0H2 523 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 MORF4L1Q9UBU8 362 aa15.2■□□□□ 0.02
PTPRF-202ENST00000372405 IGKV6D-21A0A0A0MT36 114 aa15.19■□□□□ 0.02
PTPRF-202ENST00000372405 GSTTP1A0A1W2PQM5 241 aa15.19■□□□□ 0.02
PTPRF-202ENST00000372405 TTC26A0AVF1 554 aa15.19■□□□□ 0.02
PTPRF-202ENST00000372405 MIS18BP1Q6P0N0 1132 aa15.19■□□□□ 0.02
PTPRF-202ENST00000372405 TRIM59Q8IWR1 403 aa15.19■□□□□ 0.02
PTPRF-202ENST00000372405 PCYT2Q99447 389 aa15.19■□□□□ 0.02
PTPRF-202ENST00000372405 STX10O60499 249 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 NR3C1P04150 777 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 TPM2P07951 284 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 TGFB3P10600 412 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 PLS3P13797 630 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 FECHP22830 423 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 HUNKP57058 714 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 CCDC40Q4G0X9 1142 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 CHADLQ6NUI6 762 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 FBXO16Q8IX29 292 aaPredicted RBP15.18■□□□□ 0.02
PTPRF-202ENST00000372405 CCDC155Q8N6L0 562 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 CCDC43Q96MW1 224 aaKnown RBP15.18■□□□□ 0.02
PTPRF-202ENST00000372405 PDLIM7Q9NR12 457 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 TRMT1Q9NXH9 659 aaKnown RBP15.18■□□□□ 0.02
PTPRF-202ENST00000372405 DDX41Q9UJV9 622 aaKnown RBP15.18■□□□□ 0.02
PTPRF-202ENST00000372405 SIK3Q9Y2K2 1263 aa15.18■□□□□ 0.02
PTPRF-202ENST00000372405 MAFBQ9Y5Q3 323 aaPredicted RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 75.4 ms