RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 CLIC6Q96NY7 704 aa16.3■□□□□ 0.2
COL5A1-201ENST00000371817 PCDHA5Q9Y5H7 936 aa16.3■□□□□ 0.2
COL5A1-201ENST00000371817 TRPM8Q7Z2W7 1104 aa16.3■□□□□ 0.2
COL5A1-201ENST00000371817 ZCRB1Q8TBF4 217 aaKnown RBP16.3■□□□□ 0.2
COL5A1-201ENST00000371817 SOX6P35712 828 aa16.3■□□□□ 0.2
COL5A1-201ENST00000371817 FKBP3Q00688 224 aaKnown RBP16.3■□□□□ 0.2
COL5A1-201ENST00000371817 ARMCX5Q6P1M9 558 aa16.3■□□□□ 0.2
COL5A1-201ENST00000371817 ARMT1Q9H993 441 aa16.3■□□□□ 0.2
COL5A1-201ENST00000371817 MYO18AQ92614 2054 aaKnown RBP16.29■□□□□ 0.2
COL5A1-201ENST00000371817 PPHLN1Q8NEY8 458 aaKnown RBP16.29■□□□□ 0.2
COL5A1-201ENST00000371817 MTERF3Q96E29 417 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 POLR3EQ9NVU0 708 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 DDX25Q9UHL0 483 aaKnown RBP16.29■□□□□ 0.2
COL5A1-201ENST00000371817 SMCO2A6NFE2 343 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 SPATA21Q7Z572 469 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 ETAA1Q9NY74 926 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 MAGEA13PA6NCF6 341 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 LAD1O00515 517 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 PRAMEP78395 509 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 CCDC127Q96BQ5 260 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 NT5C1BQ96P26 610 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 LLGL1Q15334 1064 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 DDI1Q8WTU0 396 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 BBS2Q9BXC9 721 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 RUBCNLQ9H714 662 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 hCG_1642624A0A1W2PR95 340 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 VHLP40337 213 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 BRDTQ58F21 947 aaPredicted RBP16.29■□□□□ 0.2
COL5A1-201ENST00000371817 SZRD1Q7Z422 152 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 CLEC4FQ8N1N0 589 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 PPP1R37O75864 691 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 CCDC80Q76M96 950 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 SFR1Q86XK3 245 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 CATSPER2Q96P56 530 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 ABCC12Q96J65 1359 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 UBTFL6P0CB48 400 aaPredicted RBP16.29■□□□□ 0.2
COL5A1-201ENST00000371817 PSMC2P35998 433 aaKnown RBP16.29■□□□□ 0.2
COL5A1-201ENST00000371817 MDH1P40925 334 aaKnown RBP16.29■□□□□ 0.2
COL5A1-201ENST00000371817 KDSRQ06136 332 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 GSPT2Q8IYD1 628 aaKnown RBP16.29■□□□□ 0.2
COL5A1-201ENST00000371817 VIPAS39Q9H9C1 493 aa16.29■□□□□ 0.2
COL5A1-201ENST00000371817 USP15Q9Y4E8 981 aaPredicted RBP16.29■□□□□ 0.2
COL5A1-201ENST00000371817 FAM26FQ5R3K3 315 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 TNNQ9UQP3 1299 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 CARMIL3Q8ND23 1372 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 IMPG1Q17R60 797 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 TOGARAM2Q6ZUX3 1019 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 P2RX5Q93086 422 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 WWP1Q9H0M0 922 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 KIF24Q5T7B8 1368 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 BFSP2Q13515 415 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.28■□□□□ 0.2
COL5A1-201ENST00000371817 PRG3Q9Y2Y8 225 aaPredicted RBP16.28■□□□□ 0.2
COL5A1-201ENST00000371817 SYNJ2BP-COX16A0A087WUM0 186 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 HMGB3O15347 200 aaKnown RBP16.28■□□□□ 0.2
COL5A1-201ENST00000371817 ENO1P06733 434 aaKnown RBP16.28■□□□□ 0.2
COL5A1-201ENST00000371817 NDUFA5Q16718 116 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 NANOGNBQ7Z5D8 188 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 ANO3Q9BYT9 981 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 ZSWIM6Q9HCJ5 1215 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 PSD3Q9NYI0 1048 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 COX16Q9P0S2 106 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 ZBED1O96006 694 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 TBL3Q12788 808 aaKnown RBP16.28■□□□□ 0.2
COL5A1-201ENST00000371817 DNAJC24Q6P3W2 148 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 ZNF212Q9UDV6 495 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 PALMO75781 387 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 ATP6V1B1P15313 513 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 HSPA13P48723 471 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 RHOT2Q8IXI1 618 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 AHI1Q8N157 1196 aa16.28■□□□□ 0.2
COL5A1-201ENST00000371817 GRID2IPA4D2P6 1211 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 PPARGP37231 505 aaPredicted RBP16.27■□□□□ 0.2
COL5A1-201ENST00000371817 CNGA2Q16280 664 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 GJA10Q969M2 543 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 F8W8V4 182 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 HEATR4Q86WZ0 1026 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 QKIQ96PU8 341 aaKnown RBP eCLIP16.27■□□□□ 0.2
COL5A1-201ENST00000371817 SENP1Q9P0U3 644 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 AKAP10O43572 662 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 MARK3P27448 753 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 ARL4AP40617 200 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 SMYD4Q8IYR2 804 aaPredicted RBP16.27■□□□□ 0.2
COL5A1-201ENST00000371817 MAN1B1Q9UKM7 699 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 SRGAP2O75044 1071 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 GPR141Q7Z602 305 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 NOP9Q86U38 636 aaKnown RBP16.27■□□□□ 0.2
COL5A1-201ENST00000371817 USE1Q9NZ43 259 aa16.27■□□□□ 0.2
COL5A1-201ENST00000371817 BIN2Q9UBW5 565 aaPredicted RBP16.27■□□□□ 0.2
COL5A1-201ENST00000371817 ABHD8Q96I13 439 aa16.27■□□□□ 0.19
COL5A1-201ENST00000371817 SEC16BQ96JE7 1060 aa16.27■□□□□ 0.19
COL5A1-201ENST00000371817 SUGT1Q9Y2Z0 365 aa16.27■□□□□ 0.19
COL5A1-201ENST00000371817 TSC22D2O75157 780 aa16.27■□□□□ 0.19
COL5A1-201ENST00000371817 GNAT1P11488 350 aa16.27■□□□□ 0.19
COL5A1-201ENST00000371817 SOX5P35711 763 aa16.27■□□□□ 0.19
COL5A1-201ENST00000371817 TRIM25Q14258 630 aaKnown RBP16.27■□□□□ 0.19
COL5A1-201ENST00000371817 INPP5DQ92835 1189 aa16.27■□□□□ 0.19
COL5A1-201ENST00000371817 ARHGEF3Q9NR81 526 aa16.27■□□□□ 0.19
COL5A1-201ENST00000371817 ADCY9O60503 1353 aa16.27■□□□□ 0.19
COL5A1-201ENST00000371817 GFPT2O94808 682 aa16.27■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms