RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 BTDP43251 543 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 LRRC47Q8N1G4 583 aaKnown RBP12.91□□□□□ -0.34
PCF11-201ENST00000298281 CCDC197Q8NCU1 140 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 CEP70Q8NHQ1 597 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 MAML1Q92585 1016 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 PPP1R16BQ96T49 567 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 TRPV6Q9H1D0 765 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 NEUROD4Q9HD90 331 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 XDHP47989 1333 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 TMEM232C9JQI7 657 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 TTLL1O95922 423 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 PSMA3P25788 255 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 LRRC74AQ0VAA2 488 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 SMAD5Q99717 465 aaKnown RBP12.91□□□□□ -0.34
PCF11-201ENST00000298281 FGAP02671 866 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 MAPK4P31152 587 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 TBC1D10BQ4KMP7 808 aaPredicted RBP12.91□□□□□ -0.34
PCF11-201ENST00000298281 APPL2Q8NEU8 664 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 USE1Q9NZ43 259 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 STMN3Q9NZ72 180 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 KIAA1024Q9UPX6 916 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 CSE1LP55060 971 aaKnown RBP12.91□□□□□ -0.34
PCF11-201ENST00000298281 GJA10Q969M2 543 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 EXOC4Q96A65 974 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 PPARGC1AQ9UBK2 798 aaKnown RBP12.91□□□□□ -0.34
PCF11-201ENST00000298281 THRAP3Q9Y2W1 955 aaKnown RBP12.91□□□□□ -0.34
PCF11-201ENST00000298281 MAP3K15Q6ZN16 1313 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 CIAO1O76071 339 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 AFPP02771 609 aaKnown RBP12.91□□□□□ -0.34
PCF11-201ENST00000298281 NR2F2P24468 414 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 MSH2P43246 934 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 MYO1EQ12965 1108 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 KRT72Q14CN4 511 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 CDC37Q16543 378 aaPredicted RBP12.91□□□□□ -0.34
PCF11-201ENST00000298281 NBPF15Q8N660 670 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 FSD1LQ9BXM9 530 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 PARVGQ9HBI0 331 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 ADCY9O60503 1353 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 CDC25BP30305 580 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 FANCLQ9NW38 375 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 CDC23Q9UJX2 597 aa12.91□□□□□ -0.34
PCF11-201ENST00000298281 AARSP49588 968 aaKnown RBP eCLIP12.9□□□□□ -0.34
PCF11-201ENST00000298281 PHKG1Q16816 387 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 FLCNQ8NFG4 579 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 SYMPKQ92797 1274 aaKnown RBP12.9□□□□□ -0.34
PCF11-201ENST00000298281 PBKQ96KB5 322 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 CNOT10Q9H9A5 744 aaKnown RBP12.9□□□□□ -0.34
PCF11-201ENST00000298281 DIABLOQ9NR28 239 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 INO80B-WBP1J3KQ70 363 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 EPHB4P54760 987 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 GUCY2DQ02846 1103 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 SEMA3FQ13275 785 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 MAN2A1Q16706 1144 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 INO80BQ9C086 356 aaPredicted RBP12.9□□□□□ -0.34
PCF11-201ENST00000298281 RPAP3Q9H6T3 665 aaPredicted RBP12.9□□□□□ -0.34
PCF11-201ENST00000298281 MAST1Q9Y2H9 1570 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 ZNF804BA4D1E1 1349 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 LZTS3O60299 673 aaPredicted RBP12.9□□□□□ -0.34
PCF11-201ENST00000298281 GUCA1AP43080 201 aaPredicted RBP12.9□□□□□ -0.34
PCF11-201ENST00000298281 GPR1P46091 355 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 ARL13BQ3SXY8 428 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 PKN3Q6P5Z2 889 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 ARMCX2Q7L311 632 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 NLRP4Q96MN2 994 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 ZNF577Q9BSK1 485 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 ATP11BQ9Y2G3 1177 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 TSPOAP1O95153 1857 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 RASGRF2O14827 1237 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 ADD1P35611 737 aaKnown RBP12.9□□□□□ -0.34
PCF11-201ENST00000298281 POLE2P56282 527 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 EHHADHQ08426 723 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 MESDQ14696 234 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 KIAA1755Q5JYT7 1200 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 EXD1Q8NHP7 514 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 CYTH2Q99418 400 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 KANSL2Q9H9L4 492 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 MRFAP1Q9Y605 127 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 TCP10L2B9ZVM9 353 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 KRT14P02533 472 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 TAC1P20366 129 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 SNCBQ16143 134 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 RPAINQ86UA6 219 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 KIAA0825Q8IV33 1275 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 SIX6OS1Q8N1H7 587 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 FHDC1Q9C0D6 1143 aaPredicted RBP12.9□□□□□ -0.34
PCF11-201ENST00000298281 ZCWPW1Q9H0M4 648 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 RUBCNLQ9H714 662 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 ZNF215Q9UL58 517 aaPredicted RBP12.9□□□□□ -0.34
PCF11-201ENST00000298281 BTBD18B2RXH4 712 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 WDR47O94967 919 aa12.9□□□□□ -0.34
PCF11-201ENST00000298281 SPDYE5A6NIY4 337 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 PGRMC1O00264 195 aaKnown RBP12.89□□□□□ -0.35
PCF11-201ENST00000298281 IPO5O00410 1097 aaKnown RBP12.89□□□□□ -0.35
PCF11-201ENST00000298281 PDE8BO95263 885 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 SPDYE7PQ495Y7 208 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 DSTYKQ6XUX3 929 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 THEM5Q8N1Q8 247 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 C1orf131Q8NDD1 294 aaKnown RBP12.89□□□□□ -0.35
PCF11-201ENST00000298281 SDR42E1Q8WUS8 393 aa12.89□□□□□ -0.35
PCF11-201ENST00000298281 CALN1Q9BXU9 219 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms