RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.35□□□□□ -1.23
VPS29-210ENST00000552130 LRCH1Q9Y2L9 728 aa7.35□□□□□ -1.23
VPS29-210ENST00000552130 ST14Q9Y5Y6 855 aa7.35□□□□□ -1.23
VPS29-210ENST00000552130 CSADQ9Y600 493 aa7.35□□□□□ -1.23
VPS29-210ENST00000552130 A6NNZ2 444 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 DCDC2CA8MYV0 355 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 FAM155AB1AL88 458 aaPredicted RBP7.34□□□□□ -1.23
VPS29-210ENST00000552130 NFIBO00712 420 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 LRIG2O94898 1065 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 IGFALSP35858 605 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 BTKQ06187 659 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 KLF1Q13351 362 aaPredicted RBP7.34□□□□□ -1.23
VPS29-210ENST00000552130 SV2CQ496J9 727 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 IFIT1BQ5T764 474 aaKnown RBP7.34□□□□□ -1.23
VPS29-210ENST00000552130 SCARA3Q6AZY7 606 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 SWSAP1Q6NVH7 229 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 UNC5AQ6ZN44 842 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 FGD2Q7Z6J4 655 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 GALNT5Q7Z7M9 940 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 C12orf40Q86WS4 652 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 ANKRD18AQ8IVF6 992 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 KCT2Q8NC54 265 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 SLC35G2Q8TBE7 412 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 HDAC2Q92769 488 aaKnown RBP7.34□□□□□ -1.23
VPS29-210ENST00000552130 HVCN1Q96D96 273 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 CCDC34Q96HJ3 373 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 TAAR9Q96RI9 348 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 PDLIM7Q9NR12 457 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 TMCC3Q9ULS5 477 aa7.34□□□□□ -1.23
VPS29-210ENST00000552130 POLR3KQ9Y2Y1 108 aaPredicted RBP7.34□□□□□ -1.23
VPS29-210ENST00000552130 GTPBP10A4D1E9 387 aaKnown RBP7.33□□□□□ -1.24
VPS29-210ENST00000552130 GOLGA6L6A8MZA4 724 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 GRIN3BO60391 1043 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 PLOD3O60568 738 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 PQBP1O60828 265 aaKnown RBP7.33□□□□□ -1.24
VPS29-210ENST00000552130 ZBED1O96006 694 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 RPS6KB1P23443 525 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 KRT20P35900 424 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 ODF1Q14990 250 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 TERF2Q15554 542 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 SKOR2Q2VWA4 1001 aaPredicted RBP7.33□□□□□ -1.24
VPS29-210ENST00000552130 CYP26C1Q6V0L0 522 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 UBE2R2Q712K3 238 aaPredicted RBP7.33□□□□□ -1.24
VPS29-210ENST00000552130 BRINP3Q76B58 766 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 FASTKD5Q7L8L6 764 aaKnown RBP7.33□□□□□ -1.24
VPS29-210ENST00000552130 C1orf162Q8NEQ5 155 aaPredicted RBP7.33□□□□□ -1.24
VPS29-210ENST00000552130 KLHL6Q8WZ60 621 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 ATP6V1E2Q96A05 226 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 FAXDC2Q96IV6 333 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 NUDT16L1Q9BRJ7 211 aaKnown RBP7.33□□□□□ -1.24
VPS29-210ENST00000552130 SLC26A6Q9BXS9 759 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 NSUN3Q9H649 340 aaKnown RBP7.33□□□□□ -1.24
VPS29-210ENST00000552130 SLC52A2Q9HAB3 445 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 ARFGAP3Q9NP61 516 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 HELLSQ9NRZ9 838 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 CRYL1Q9Y2S2 319 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 SAMM50Q9Y512 469 aa7.33□□□□□ -1.24
VPS29-210ENST00000552130 SMTNL1A8MU46 457 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 AP1G1O43747 822 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 PSMA3P25788 255 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 CAP2P40123 477 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 BUD31P41223 144 aaPredicted RBP7.32□□□□□ -1.24
VPS29-210ENST00000552130 KRT85P78386 507 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 RASIP1Q5U651 963 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 CDCA2Q69YH5 1023 aaPredicted RBP7.32□□□□□ -1.24
VPS29-210ENST00000552130 GPR155Q7Z3F1 870 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 ZNF713Q8N859 430 aaPredicted RBP7.32□□□□□ -1.24
VPS29-210ENST00000552130 LSMEM1Q8N8F7 131 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 GSTCDQ8NEC7 633 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 DDX11Q96FC9 970 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 SEC62Q99442 399 aaKnown RBP7.32□□□□□ -1.24
VPS29-210ENST00000552130 FAM204AQ9H8W3 233 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 ATP6V0A4Q9HBG4 840 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 ANKEF1Q9NU02 776 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 CAPN6Q9Y6Q1 641 aa7.32□□□□□ -1.24
VPS29-210ENST00000552130 RRN3P2A6NIE6 340 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 RASA4BC9J798 803 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 NPIPB6E9PJ23 425 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 EYA2O00167 538 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 RASA4O43374 803 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 EFCAB14O75071 495 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 INMTO95050 263 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 CFBP00751 764 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 FGFR1P11362 822 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 PABPC1P11940 636 aaKnown RBP7.31□□□□□ -1.24
VPS29-210ENST00000552130 GLDCP23378 1020 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 HOXD12P35452 270 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 IL2P60568 153 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 KRT83P78385 493 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 SLC7A5Q01650 507 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 FAPQ12884 760 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 GRM1Q13255 1194 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 SLBPQ14493 270 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS29-210ENST00000552130 SART3Q15020 963 aaKnown RBP7.31□□□□□ -1.24
VPS29-210ENST00000552130 RGL3Q3MIN7 710 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 RRP12Q5JTH9 1297 aaKnown RBP7.31□□□□□ -1.24
VPS29-210ENST00000552130 KRTAP5-3Q6L8H2 238 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 PGM2L1Q6PCE3 622 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 CDC37L1Q7L3B6 337 aa7.31□□□□□ -1.24
VPS29-210ENST00000552130 THAP5Q7Z6K1 395 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms