RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 KCTD17Q8N5Z5 321 aa20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 ANKRD13CQ8N6S4 541 aa20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 SUGCTQ9HAC7 445 aa20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 TYW1Q9NV66 732 aaKnown RBP20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 ARMCX3Q9UH62 379 aaPredicted RBP20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 PRDM4Q9UKN5 801 aa20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 ZNRF3Q9ULT6 936 aa20.39■□□□□ 0.85
PRPF40B-208ENST00000548436 AKAP3O75969 853 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 PRELPP51888 382 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 CKAP4Q07065 602 aaKnown RBP20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 SMC1AQ14683 1233 aaKnown RBP20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 NBPF9Q3BBW0 867 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 C1orf186Q6ZWK4 172 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 AGBL3Q8NEM8 1001 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 DRC1Q96MC2 740 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 OLFML3Q9NRN5 406 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 WRAP73Q9P2S5 460 aaPredicted RBP20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 FEM1BQ9UK73 627 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 SNX12Q9UMY4 172 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 L1RE1Q9UN81 338 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 SCAF8Q9UPN6 1271 aaKnown RBP20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 FER1L6Q2WGJ9 1857 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 GAS7O60861 476 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 ERLIN1O75477 346 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 NR3C1P04150 777 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 ACTN1P12814 892 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 WDR93Q6P2C0 686 aa20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 ZBED3Q96IU2 234 aaPredicted RBP20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 RNF216Q9NWF9 866 aaPredicted RBP20.38■□□□□ 0.85
PRPF40B-208ENST00000548436 WNT10BO00744 389 aa20.37■□□□□ 0.85
PRPF40B-208ENST00000548436 SLC9A1P19634 815 aa20.37■□□□□ 0.85
PRPF40B-208ENST00000548436 CASP4P49662 377 aa20.37■□□□□ 0.85
PRPF40B-208ENST00000548436 RAPGEF1Q13905 1077 aa20.37■□□□□ 0.85
PRPF40B-208ENST00000548436 NIM1KQ8IY84 436 aa20.37■□□□□ 0.85
PRPF40B-208ENST00000548436 IKZF4Q9H2S9 585 aa20.37■□□□□ 0.85
PRPF40B-208ENST00000548436 UNC45AQ9H3U1 944 aa20.37■□□□□ 0.85
PRPF40B-208ENST00000548436 AIPL1Q9NZN9 384 aa20.37■□□□□ 0.85
PRPF40B-208ENST00000548436 SHTN1A0MZ66 631 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 CLIC2O15247 247 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 TGFB1I1O43294 461 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 AFPP02771 609 aaKnown RBP20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 GAP43P17677 238 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 NMT1P30419 496 aaKnown RBP20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 INPP5BP32019 993 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 MAP3K10Q02779 954 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 ARID5AQ03989 594 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 CXCL9Q07325 125 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 CREG2Q8IUH2 290 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 FAM133AQ8N9E0 248 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 RPGRIP1Q96KN7 1286 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 AGBL1Q96MI9 1066 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 ZNF577Q9BSK1 485 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 EHMT1Q9H9B1 1298 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 ZMYM2Q9UBW7 1377 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 LOXHD1Q8IVV2 1947 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 FAM13AO94988 1023 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 TUBBP07437 444 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 OAS2P29728 719 aaKnown RBP20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 PTGER2P43116 358 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 MYCT1Q8N699 235 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 CAGE1Q8TC20 777 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 COG1Q8WTW3 980 aa20.36■□□□□ 0.85
PRPF40B-208ENST00000548436 ZNF536O15090 1300 aa20.35■□□□□ 0.85
PRPF40B-208ENST00000548436 POLR3GO15318 223 aaPredicted RBP20.35■□□□□ 0.85
PRPF40B-208ENST00000548436 ASNSP08243 561 aa20.35■□□□□ 0.85
PRPF40B-208ENST00000548436 XRCC5P13010 732 aaKnown RBP20.35■□□□□ 0.85
PRPF40B-208ENST00000548436 ZC2HC1CQ53FD0 456 aaPredicted RBP20.35■□□□□ 0.85
PRPF40B-208ENST00000548436 B3GNT9Q6UX72 402 aa20.35■□□□□ 0.85
PRPF40B-208ENST00000548436 HDXQ7Z353 690 aa20.35■□□□□ 0.85
PRPF40B-208ENST00000548436 ALS2CR12Q96Q35 445 aa20.35■□□□□ 0.85
PRPF40B-208ENST00000548436 VPS33BQ9H267 617 aa20.35■□□□□ 0.85
PRPF40B-208ENST00000548436 ZCCHC17Q9NP64 241 aaKnown RBP20.35■□□□□ 0.85
PRPF40B-208ENST00000548436 BUB1O43683 1085 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 PRLRP16471 622 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 PON1P27169 355 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 DCAF17Q5H9S7 520 aaPredicted RBP20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 ZNF341Q9BYN7 854 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 PLCB1Q9NQ66 1216 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 FRMPD4Q14CM0 1322 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 A0A087X0T9 212 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 EIF3DO15371 548 aaKnown RBP eCLIP20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 SLC16A3O15427 465 aaKnown RBP20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 FAM228BP0C875 321 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 RPL13P26373 211 aaKnown RBP20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 HSD17B4P51659 736 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 KLHL30Q0D2K2 578 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 ENOX2Q16206 610 aaKnown RBP20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 ASIC2Q16515 512 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 SLC18A3Q16572 532 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 KLHDC7AQ5VTJ3 777 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 NFRKBQ6P4R8 1299 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 ZNF771Q7L3S4 317 aaPredicted RBP20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 FIZ1Q96SL8 496 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 OSBPL9Q96SU4 736 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 WDR11Q9BZH6 1224 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 GBP3Q9H0R5 595 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 DEFB129Q9H1M3 183 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 PARVGQ9HBI0 331 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 COL20A1Q9P218 1284 aa20.34■□□□□ 0.85
PRPF40B-208ENST00000548436 CCPG1Q9ULG6 757 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms