RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 TLR2O60603 784 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 EHHADHQ08426 723 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 NBPF9Q3BBW0 867 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 EMBQ6PCB8 327 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 PACS2Q86VP3 889 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 ZBTB21Q9ULJ3 1066 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 SSU72P8A0A1W2PR75 194 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 ZSCAN5CA6NGD5 496 aaPredicted RBP13.74□□□□□ -0.21
RNF4-222ENST00000541204 MSH4O15457 936 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 NOL4O94818 638 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 GLI1P08151 1106 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 CYP11B2P19099 503 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 GNGT1P63211 74 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 CFAP221Q4G0U5 840 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 CCDC40Q4G0X9 1142 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 TTMPQ5BVD1 217 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 SLFN12Q8IYM2 578 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 LENG9Q96B70 501 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 RUFY1Q96T51 708 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 LRRC27Q9C0I9 530 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 RGL1Q9NZL6 768 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 HERC5Q9UII4 1024 aaKnown RBP13.74□□□□□ -0.21
RNF4-222ENST00000541204 COL4A3BPQ9Y5P4 624 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 KDM3AQ9Y4C1 1321 aa13.74□□□□□ -0.21
RNF4-222ENST00000541204 ESYT3A0FGR9 886 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 OPA1O60313 960 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 HSF2BPO75031 334 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 PALMO75781 387 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 FTCDO95954 541 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 POLR2FP61218 127 aaKnown RBP13.73□□□□□ -0.21
RNF4-222ENST00000541204 ARID5AQ03989 594 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 SLC9C1Q4G0N8 1177 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 RTKN2Q8IZC4 609 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 BCAS4Q8TDM0 211 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 FAM151AQ8WW52 585 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 NAP1L4Q99733 375 aaKnown RBP13.73□□□□□ -0.21
RNF4-222ENST00000541204 CNTNAP1P78357 1384 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 CYP3A7-CYP3A51PA0A087WV96 503 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 VIL1P09327 827 aaKnown RBP13.73□□□□□ -0.21
RNF4-222ENST00000541204 KCNA3P22001 575 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 CYP3A7P24462 503 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 CARSP49589 748 aaKnown RBP13.73□□□□□ -0.21
RNF4-222ENST00000541204 FKBP3Q00688 224 aaKnown RBP13.73□□□□□ -0.21
RNF4-222ENST00000541204 SPIRE1Q08AE8 756 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 PSMD2Q13200 908 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 ENOX2Q16206 610 aaKnown RBP13.73□□□□□ -0.21
RNF4-222ENST00000541204 ARSHQ5FYA8 562 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 SFMBT2Q5VUG0 894 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 CCDC65Q8IXS2 484 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 RNF10Q8N5U6 811 aaKnown RBP13.73□□□□□ -0.21
RNF4-222ENST00000541204 CRYGNQ8WXF5 182 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 CAVIN3Q969G5 261 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 ZIM3Q96PE6 472 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 LSM14BQ9BX40 385 aaKnown RBP13.73□□□□□ -0.21
RNF4-222ENST00000541204 CEP72Q9P209 647 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 NFU1Q9UMS0 254 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 PACSIN2Q9UNF0 486 aaPredicted RBP13.73□□□□□ -0.21
RNF4-222ENST00000541204 GRIN2DO15399 1336 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 COL4A5P29400 1685 aa13.73□□□□□ -0.21
RNF4-222ENST00000541204 RBAK-RBAKDNI3L0D1 243 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 KRT14P02533 472 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 FAM153BP0C7A2 387 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 SREBF1P36956 1147 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 CASP5P51878 434 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 DGKZQ13574 1117 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 FAM153CQ494X1 144 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 TTC31Q49AM3 519 aaPredicted RBP13.72□□□□□ -0.21
RNF4-222ENST00000541204 ZCWPW2Q504Y3 356 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 PPM1EQ8WY54 764 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 IFT81Q8WYA0 676 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 GMLQ99445 158 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 GOPCQ9HD26 462 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 FAM153AQ9UHL3 310 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 SMCHD1A6NHR9 2005 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 SFI1A8K8P3 1242 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 EML1O00423 815 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 EIF3HO15372 352 aaKnown RBP eCLIP13.72□□□□□ -0.21
RNF4-222ENST00000541204 SERPING1P05155 500 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 SPATA31C1P0DKV0 1188 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 KLRC1P26715 233 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 NOP2P46087 812 aaKnown RBP13.72□□□□□ -0.21
RNF4-222ENST00000541204 RNASE9P60153 205 aaKnown RBP13.72□□□□□ -0.21
RNF4-222ENST00000541204 ALS2CLQ60I27 953 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 KCTD16Q68DU8 428 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 NIM1KQ8IY84 436 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 SH2D3CQ8N5H7 860 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 PIGOQ8TEQ8 1089 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.72□□□□□ -0.21
RNF4-222ENST00000541204 EDEM3Q9BZQ6 932 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 EPB41L5Q9HCM4 733 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 TMX2Q9Y320 296 aa13.72□□□□□ -0.21
RNF4-222ENST00000541204 ZBTB39O15060 712 aa13.71□□□□□ -0.21
RNF4-222ENST00000541204 HEXIM1O94992 359 aaKnown RBP13.71□□□□□ -0.21
RNF4-222ENST00000541204 TNFRSF8P28908 595 aa13.71□□□□□ -0.21
RNF4-222ENST00000541204 GUCY2DQ02846 1103 aa13.71□□□□□ -0.21
RNF4-222ENST00000541204 CTTNQ14247 550 aaKnown RBP13.71□□□□□ -0.21
RNF4-222ENST00000541204 SPDYE2Q495Y8 402 aa13.71□□□□□ -0.21
RNF4-222ENST00000541204 GBP6Q6ZN66 633 aa13.71□□□□□ -0.21
RNF4-222ENST00000541204 EFCAB13Q8IY85 973 aa13.71□□□□□ -0.21
RNF4-222ENST00000541204 SCFD1Q8WVM8 642 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms