RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 STX17P56962 302 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 STX1AQ16623 288 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 HAS1Q92839 578 aa9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 NAT10Q9H0A0 1025 aaKnown RBP9.59□□□□□ -0.87
LIMCH1-209ENST00000509277 EML1O00423 815 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 ATP1A3P13637 1013 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 USP11P51784 963 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 KIF22Q14807 665 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 E4F1Q66K89 784 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 IQUBQ8NA54 791 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 PPM1EQ8WY54 764 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 HPS3Q969F9 1004 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 VTI1AQ96AJ9 217 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 SCLT1Q96NL6 688 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 GINS2Q9Y248 185 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 KIAA0100Q14667 2235 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 EIF3JO75822 258 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 GGPS1O95749 300 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 TXNP10599 105 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 ELNP15502 786 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 GCFC2P16383 781 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 HSD17B4P51659 736 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 ETF1P62495 437 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 CD99L2Q8TCZ2 262 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 CAPZA3Q96KX2 299 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 GEMIN8Q9NWZ8 242 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 MYH7BA7E2Y1 1941 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 GREB1LQ9C091 1923 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 PHIPQ8WWQ0 1821 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 NPHP3-ACAD11A0A0J9YXS1 232 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 KIF2AO00139 706 aaPredicted RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 TLR2O60603 784 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 IVLP07476 585 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 UBASH3AP57075 661 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 RESP18Q5W5W9 173 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 TRIM50Q86XT4 487 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 ERMNQ8TAM6 284 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 MPHOSPH6Q99547 160 aaKnown RBP9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 FAM204AQ9H8W3 233 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 ANO10Q9NW15 660 aa9.58□□□□□ -0.88
LIMCH1-209ENST00000509277 EDIL3O43854 480 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 ADCYAP1R1P41586 468 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 OAZ1P54368 228 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 ACTN3Q08043 901 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 E2F5Q15329 346 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 SWSAP1Q6NVH7 229 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 CC2D1AQ6P1N0 951 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 FAM43BQ6ZT52 329 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 ARMCX2Q7L311 632 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 UNC45AQ9H3U1 944 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 MROH8Q9H579 483 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 CREBZFQ9NS37 354 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 PFASO15067 1338 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 COL11A1P12107 1806 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 LONP1P36776 959 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 NAA25Q14CX7 972 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 FAM110CQ1W6H9 321 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 SLFN12Q8IYM2 578 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 BHMT2Q9H2M3 363 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 ACBD3Q9H3P7 528 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 HOOK1Q9UJC3 728 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 CAPN7Q9Y6W3 813 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 FAM155AB1AL88 458 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 CLSTN1O94985 981 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 PSMC6P62333 389 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 PLA2G4FQ68DD2 849 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 KCNK18Q7Z418 384 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 FMR1NBQ8N0W7 255 aaPredicted RBP9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 EIF2AK1Q9BQI3 630 aaKnown RBP9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 CLSTN2Q9H4D0 955 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 DISC1Q9NRI5 854 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 PCDHA5Q9Y5H7 936 aa9.57□□□□□ -0.88
LIMCH1-209ENST00000509277 MCM3APO60318 1980 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 PAPPA2Q9BXP8 1791 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 PIK3CDO00329 1044 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 DYNC1LI2O43237 492 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 USO1O60763 962 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 MED24O75448 989 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 KIAA0754O94854 1291 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 FLT3LGP49771 235 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 CCZ1BP86790 482 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 CCZ1P86791 482 aaPredicted RBP9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 CUL4BQ13620 913 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 POSTNQ15063 836 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 DPCR1Q3MIW9 517 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 TRMT44Q8IYL2 757 aaKnown RBP9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 C4orf32Q8N8J7 132 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 NPLOC4Q8TAT6 608 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 CAGE1Q8TC20 777 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 WDR24Q96S15 920 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 GABBR1Q9UBS5 961 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 GABRQQ9UN88 632 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 ADAMTS5Q9UNA0 930 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 MYPNQ86TC9 1320 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 B4DLN1 442 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 MAGEA9P43362 315 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 NPEPPSP55786 919 aa9.56□□□□□ -0.88
LIMCH1-209ENST00000509277 SLC20A2Q08357 652 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms