RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 ATP8A1Q9Y2Q0 1164 aa20.14■□□□□ 0.82
USP48-204ENST00000400301 HNRNPDLO14979 420 aaKnown RBP20.14■□□□□ 0.81
USP48-204ENST00000400301 C21orf2O43822 256 aa20.14■□□□□ 0.81
USP48-204ENST00000400301 GAS8O95995 478 aa20.14■□□□□ 0.81
USP48-204ENST00000400301 EIF2AK2P19525 551 aaKnown RBP20.14■□□□□ 0.81
USP48-204ENST00000400301 NT5C1BQ96P26 610 aa20.14■□□□□ 0.81
USP48-204ENST00000400301 FAM114A2Q9NRY5 505 aa20.14■□□□□ 0.81
USP48-204ENST00000400301 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.14■□□□□ 0.81
USP48-204ENST00000400301 ANKRD65E5RJM6 399 aa20.14■□□□□ 0.81
USP48-204ENST00000400301 LIG4P49917 911 aa20.14■□□□□ 0.81
USP48-204ENST00000400301 PRELPP51888 382 aa20.14■□□□□ 0.81
USP48-204ENST00000400301 DHX9Q08211 1270 aaKnown RBP20.14■□□□□ 0.81
USP48-204ENST00000400301 GRIK5Q16478 980 aa20.14■□□□□ 0.81
USP48-204ENST00000400301 PLCB1Q9NQ66 1216 aa20.14■□□□□ 0.81
USP48-204ENST00000400301 NKIRAS1Q9NYS0 192 aa20.14■□□□□ 0.81
USP48-204ENST00000400301 LRRC10BA6NIK2 292 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 TFRCP02786 760 aaKnown RBP20.13■□□□□ 0.81
USP48-204ENST00000400301 ACTN1P12814 892 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 PLTPP55058 493 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 SLC18A3Q16572 532 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 HHIPL2Q6UWX4 724 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 HNRNPLLQ8WVV9 542 aaKnown RBP20.13■□□□□ 0.81
USP48-204ENST00000400301 ANKS1AQ92625 1134 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 MS4A14Q96JA4 679 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 BEND6Q5SZJ8 279 aaPredicted RBP20.13■□□□□ 0.81
USP48-204ENST00000400301 CENPPQ6IPU0 288 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 BANK1Q8NDB2 785 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 REEP2Q9BRK0 252 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 NYAP2Q9P242 653 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 FGGP02679 453 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 DCUN1D2Q6PH85 259 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 CEP57Q86XR8 500 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 GOLGA8IPA6NC78 632 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 GOLGA8JA6NMD2 632 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 MFAP3P55082 362 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 TRPC3Q13507 836 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 FRMD5Q7Z6J6 570 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 DEPTORQ8TB45 409 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 RIN2Q8WYP3 895 aaPredicted RBP20.13■□□□□ 0.81
USP48-204ENST00000400301 ZNF653Q96CK0 615 aa20.13■□□□□ 0.81
USP48-204ENST00000400301 A0A0U1RQJ8 604 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 HERVK_113P62684 666 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 NFIAQ12857 509 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 CCNI2Q6ZMN8 369 aaPredicted RBP20.12■□□□□ 0.81
USP48-204ENST00000400301 TRAPPC11Q7Z392 1133 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 SPATA20Q8TB22 786 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 RIOX1Q9H6W3 641 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 PDXKO00764 312 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 GYS1P13807 737 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 NMT1P30419 496 aaKnown RBP20.12■□□□□ 0.81
USP48-204ENST00000400301 TRIM49P0CI25 452 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 TRIM49CP0CI26 452 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 ATP5DP30049 168 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 IL17AQ16552 155 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 GNPTABQ3T906 1256 aa20.12■□□□□ 0.81
USP48-204ENST00000400301 MRRFQ96E11 262 aaKnown RBP20.12■□□□□ 0.81
USP48-204ENST00000400301 DUSP9Q99956 384 aaKnown RBP20.12■□□□□ 0.81
USP48-204ENST00000400301 EYA4O95677 639 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 POLD1P28340 1107 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 TAOK1Q7L7X3 1001 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 FEZ2Q9UHY8 353 aaPredicted RBP20.11■□□□□ 0.81
USP48-204ENST00000400301 PTPN22Q9Y2R2 807 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 CCDC188H7C350 402 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 NR1D1P20393 614 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 ZNF341Q9BYN7 854 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 DDX47Q9H0S4 455 aaKnown RBP20.11■□□□□ 0.81
USP48-204ENST00000400301 PDCLQ13371 301 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 DRAP1Q14919 205 aaPredicted RBP20.11■□□□□ 0.81
USP48-204ENST00000400301 PADI6Q6TGC4 694 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 KIAA0895Q8NCT3 520 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 MSANTD4Q8NCY6 345 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 VTI1AQ96AJ9 217 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 SLC9A1P19634 815 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 PEX3P56589 373 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 CEP170P1Q96L14 293 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 KMT5AQ9NQR1 393 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 ZNF446Q9NWS9 450 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 CAPN7Q9Y6W3 813 aa20.11■□□□□ 0.81
USP48-204ENST00000400301 CD19P15391 556 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 GLYCTKQ8IVS8 523 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 AGTPBP1Q9UPW5 1226 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 UCHL3P15374 230 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 GCLMP48507 274 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 EDRF1Q3B7T1 1238 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 IPO4Q8TEX9 1081 aaKnown RBP20.1■□□□□ 0.81
USP48-204ENST00000400301 MAIP1Q8WWC4 291 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 L1RE1Q9UN81 338 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 ASNSP08243 561 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 FIGNQ5HY92 759 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 MGARPQ8TDB4 240 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 HSD3B7Q9H2F3 369 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 PODXL2Q9NZ53 605 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 CAPN6Q9Y6Q1 641 aa20.1■□□□□ 0.81
USP48-204ENST00000400301 IPO5O00410 1097 aaKnown RBP20.09■□□□□ 0.81
USP48-204ENST00000400301 MYBP10242 640 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 CUL1Q13616 776 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 STRIP1Q5VSL9 837 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 DNAJC5Q9H3Z4 198 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 ABCB11O95342 1321 aa20.09■□□□□ 0.81
USP48-204ENST00000400301 HGSO14964 777 aaPredicted RBP20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms