RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 TTI2Q6NXR4 508 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 FBXO33Q7Z6M2 555 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 MSANTD4Q8NCY6 345 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 ACCSQ96QU6 501 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 BUD13Q9BRD0 619 aaKnown RBP eCLIP5□□□□□ -1.611e-6■■□□□ 14
VPS13C-201ENST00000249837 PARVGQ9HBI0 331 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 MRPL11Q9Y3B7 192 aaKnown RBP5□□□□□ -1.61
VPS13C-201ENST00000249837 GMNCA6NCL1 334 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 HMGB1P1B2RPK0 211 aaPredicted RBP5□□□□□ -1.61
VPS13C-201ENST00000249837 MAPK4P31152 587 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 C10orf76Q5T2E6 689 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 TRIM51Q9BSJ1 452 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 SEMA6BQ9H3T3 888 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 DBNDD1Q9H9R9 158 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 XRN1Q8IZH2 1706 aaKnown RBP5□□□□□ -1.61
VPS13C-201ENST00000249837 FAM205AQ6ZU69 1335 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 A0A087X0T9 212 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 TOM1O60784 492 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 ACSL3O95573 720 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 FAM228BP0C875 321 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 FGFR2P21802 821 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 CUL1Q13616 776 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 TRAPPC11Q7Z392 1133 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 CHURC1Q8WUH1 139 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 HDAC7Q8WUI4 952 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 CASKIN2Q8WXE0 1202 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 ANO9A1A5B4 782 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 CORO7P57737 925 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 SESN3P58005 492 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 CTAGE3PQ8IX95 158 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 SH2D4AQ9H788 454 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 ANKZF1Q9H8Y5 726 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5□□□□□ -1.61
VPS13C-201ENST00000249837 A0A087X0B3 334 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 HIP1RO75146 1068 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 ZRANB2O95218 330 aaKnown RBP eCLIP5□□□□□ -1.61
VPS13C-201ENST00000249837 RASSF2P50749 326 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 SEC24CP53992 1094 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 PPP2R2AP63151 447 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 HDLBPQ00341 1268 aaKnown RBP5□□□□□ -1.61
VPS13C-201ENST00000249837 EVX2Q03828 476 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 NEK9Q8TD19 979 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 TRAF3IP1Q8TDR0 691 aaPredicted RBP5□□□□□ -1.61
VPS13C-201ENST00000249837 N4BP2L2Q92802 583 aaPredicted RBP5□□□□□ -1.61
VPS13C-201ENST00000249837 CELF4Q9BZC1 486 aaKnown RBP5□□□□□ -1.61
VPS13C-201ENST00000249837 ZMYND12Q9H0C1 365 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 OVOS2A0A0G2JMS6 1433 aa5□□□□□ -1.61
VPS13C-201ENST00000249837 CHUKO15111 745 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 RAD51CO43502 376 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 CAMTA2O94983 1202 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 SEPT2Q15019 361 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 CEP128Q6ZU80 1094 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 EHD4Q9H223 541 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 PSD3Q9NYI0 1048 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 TCRBV5S4A2TA0A5A2 114 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 PDE2AO00408 941 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 RASGRF2O14827 1237 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 MMGT1Q8N4V1 131 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 BANK1Q8NDB2 785 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 C1orf54Q8WWF1 131 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 ATP6V1G3Q96LB4 118 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 TAF1DQ9H5J8 278 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 CCPG1Q9ULG6 757 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 ZNF148Q9UQR1 794 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 PDS5AQ29RF7 1337 aaKnown RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 CCDC160A6NGH7 325 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 PSMD14O00487 310 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 EIF3HO15372 352 aaKnown RBP eCLIP4.99□□□□□ -1.619e-7■■■■□ 25.2
VPS13C-201ENST00000249837 TTI1O43156 1089 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 CIB2O75838 187 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 MYBP10242 640 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 PMS1P54277 932 aaKnown RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 KCTD19Q17RG1 926 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 XKR9Q5GH70 373 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 PASD1Q8IV76 773 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 FBXL16Q8N461 479 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 ZIM3Q96PE6 472 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 AMACRQ9UHK6 382 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 KRT19P08727 400 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 SLC9A1P19634 815 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 GCKP35557 465 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 PKN1Q16512 942 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 MUM1L1Q5H9M0 696 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 BSPRYQ5W0U4 402 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 DUSP9Q99956 384 aaKnown RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 MXD3Q9BW11 206 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 EPN3Q9H201 632 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 RGL1Q9NZL6 768 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 FAM208AQ9UK61 1670 aaKnown RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 RHOBTB3O94955 611 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 PPP2R5DQ14738 602 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 STMN2Q93045 179 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 ZNF512BQ96KM6 892 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 CNOT10Q9H9A5 744 aaKnown RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 NARFQ9UHQ1 456 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 ZNF335Q9H4Z2 1342 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 SSTR3P32745 418 aaPredicted RBP4.99□□□□□ -1.61
VPS13C-201ENST00000249837 TRPC3Q13507 836 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 DLGAP5Q15398 846 aa4.99□□□□□ -1.61
VPS13C-201ENST00000249837 SEC23AQ15436 765 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms