RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	POTEA	Q6S8J7	498 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	CACNA2D4	Q7Z3S7	1137 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	OGFOD1	Q8N543	542 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	TBC1D5	Q92609	795 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	SIPA1L1	O43166	1804 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	PVALEF	A0A1B0GWK0	134 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	FAM86B1	E9PN63	330 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	MED24	O75448	989 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	KRT18	P05783	430 aa	Known RBP	13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	FAM86B2	P0C5J1	330 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	GCFC2	P16383	781 aa	Known RBP	13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	ITIH3	Q06033	890 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	FAM83B	Q5T0W9	1011 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	HAUS3	Q68CZ6	603 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	LRRC55	Q6ZSA7	311 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	GUF1	Q8N442	669 aa	Known RBP	13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	SUPT20H	Q8NEM7	779 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	MS4A14	Q96JA4	679 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	NLRC4	Q9NPP4	1024 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	PANK4	Q9NVE7	773 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	ZNF70	Q9UC06	446 aa	Predicted RBP	13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	PRR12	Q9ULL5	1215 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	SRCAP	Q6ZRS2	3230 aa		13.78	□□□□□ -0.2
RNF4-222	ENST00000541204	SHOX2	O60902	331 aa	Predicted RBP	13.77	□□□□□ -0.2
RNF4-222	ENST00000541204	CFB	P00751	764 aa		13.77	□□□□□ -0.2
RNF4-222	ENST00000541204	DPEP1	P16444	411 aa		13.77	□□□□□ -0.2
RNF4-222	ENST00000541204	NAP1L1	P55209	391 aa	Known RBP	13.77	□□□□□ -0.2
RNF4-222	ENST00000541204	CYP4A11	Q02928	519 aa		13.77	□□□□□ -0.2
RNF4-222	ENST00000541204	COASY	Q13057	564 aa		13.77	□□□□□ -0.2
RNF4-222	ENST00000541204	GPBP1	Q86WP2	473 aa		13.77	□□□□□ -0.2
RNF4-222	ENST00000541204	GMCL1P1	Q8NEA9	526 aa		13.77	□□□□□ -0.2
RNF4-222	ENST00000541204	TLR10	Q9BXR5	811 aa		13.77	□□□□□ -0.2
RNF4-222	ENST00000541204	STIM2	Q9P246	746 aa		13.77	□□□□□ -0.2
RNF4-222	ENST00000541204	PLA2G4B	P0C869	781 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	MAGEA9	P43362	315 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	PSMC6	P62333	389 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	LRRC63	Q05C16	580 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	TDRD12	Q587J7	1177 aa	Known RBP	13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	PDXDC1	Q6P996	788 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	TSEN2	Q8NCE0	465 aa	Known RBP	13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	GMCL1	Q96IK5	515 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	RABEP2	Q9H5N1	569 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	RBM12	Q9NTZ6	932 aa	Known RBP	13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	MYH7B	A7E2Y1	1941 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	OPLAH	O14841	1288 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	FGFR1OP	O95684	399 aa	Known RBP	13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	ZNF76	P36508	570 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	PAFAH1B1	P43034	410 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	IRAK1	P51617	712 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	CORO7	P57737	925 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	KCNMA1	Q12791	1236 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	PABPC4	Q13310	644 aa	Known RBP eCLIP	13.77	□□□□□ -0.21	1e-6	■■■□□ 16.1
RNF4-222	ENST00000541204	ASTE1	Q2TB18	679 aa	Predicted RBP	13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	HERC4	Q5GLZ8	1057 aa	Predicted RBP	13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	KLHDC7A	Q5VTJ3	777 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	HGSNAT	Q68CP4	663 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	DNAJC19	Q96DA6	116 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	GLIS2	Q9BZE0	524 aa	Predicted RBP	13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	KCNMB3	Q9NPA1	279 aa		13.77	□□□□□ -0.21
RNF4-222	ENST00000541204	SHTN1	A0MZ66	631 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	PJA2	O43164	708 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	DNA2	P51530	1060 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	USP11	P51784	963 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	DNAJC21	Q5F1R6	531 aa	Known RBP	13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	TTC19	Q6DKK2	380 aa	Predicted RBP	13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	C8orf74	Q6P047	294 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	BMP2K	Q9NSY1	1161 aa	Predicted RBP	13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	ABCB11	O95342	1321 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	STAT2	P52630	851 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	EPHB4	P54760	987 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	FAM26F	Q5R3K3	315 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	CATSPER3	Q86XQ3	398 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	NOX5	Q96PH1	765 aa		13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	RGS17	Q9UGC6	210 aa	Predicted RBP	13.76	□□□□□ -0.21
RNF4-222	ENST00000541204	ATRNL1	Q5VV63	1379 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	TRAF5	O00463	557 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	NPM3	O75607	178 aa	Known RBP	13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	APBA1	Q02410	837 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	MYOCD	Q8IZQ8	938 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	RUBCN	Q92622	972 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	TSG101	Q99816	390 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	SH3GL2	Q99962	352 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	CAPS2	Q9BXY5	557 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	NT5C3A	Q9H0P0	336 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	GLT8D2	Q9H1C3	349 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	GREB1L	Q9C091	1923 aa	Predicted RBP	13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	CHMP2A	O43633	222 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	CCT5	P48643	541 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	PPFIA1	Q13136	1202 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	AP3B2	Q13367	1082 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	ETNPPL	Q8TBG4	499 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	ARL8A	Q96BM9	186 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	BCAS3	Q9H6U6	928 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	ARHGEF10L	Q9HCE6	1279 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	FBXO28	Q9NVF7	368 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	HDAC9	Q9UKV0	1011 aa		13.75	□□□□□ -0.21
RNF4-222	ENST00000541204	C10orf71	Q711Q0	1435 aa		13.74	□□□□□ -0.21
RNF4-222	ENST00000541204	GOLGA8K	D6RF30	607 aa		13.74	□□□□□ -0.21

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