RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 C6orf222P0C671 652 aaPredicted RBP6.54□□□□□ -1.36
PTPN4-210ENST00000485247 FCER1AP12319 257 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 USP14P54578 494 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 GSTO1P78417 241 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 COG2Q14746 738 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 FOXD4L6Q3SYB3 417 aaPredicted RBP6.54□□□□□ -1.36
PTPN4-210ENST00000485247 C8orf34Q49A92 452 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 FOXD4L3Q6VB84 417 aaPredicted RBP6.54□□□□□ -1.36
PTPN4-210ENST00000485247 SPRED2Q7Z698 418 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 METTL16Q86W50 562 aaKnown RBP6.54□□□□□ -1.36
PTPN4-210ENST00000485247 MAPKAPK5Q8IW41 473 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 RPUSD2Q8IZ73 545 aaKnown RBP6.54□□□□□ -1.36
PTPN4-210ENST00000485247 ABRAQ8N0Z2 381 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 TGFBRAP1Q8WUH2 860 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 NSUN4Q96CB9 384 aaKnown RBP6.54□□□□□ -1.36
PTPN4-210ENST00000485247 SCLYQ96I15 445 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 MEGF10Q96KG7 1140 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 SPACA7Q96KW9 195 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 ARID3AQ99856 593 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 KIAA1683Q9H0B3 1180 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 RAI14Q9P0K7 980 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 SAP30BPQ9UHR5 308 aaKnown RBP6.54□□□□□ -1.36
PTPN4-210ENST00000485247 CNPY2Q9Y2B0 182 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 PPME1Q9Y570 386 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 SIPA1L1O43166 1804 aa6.54□□□□□ -1.36
PTPN4-210ENST00000485247 ZNF536O15090 1300 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 SMNDC1O75940 238 aaKnown RBP eCLIP6.53□□□□□ -1.36
PTPN4-210ENST00000485247 KRT37O76014 449 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 ALX3O95076 343 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 EPHA1P21709 976 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 RFX5P48382 616 aaPredicted RBP6.53□□□□□ -1.36
PTPN4-210ENST00000485247 TIMM10P62072 90 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 TCF15Q12870 199 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 TTLL4Q14679 1199 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 ALKBH2Q6NS38 261 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 DEFB128Q7Z7B8 93 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 CACTIN-AS1Q8N1I8 211 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 PCSK9Q8NBP7 692 aaKnown RBP6.53□□□□□ -1.36
PTPN4-210ENST00000485247 GDPD5Q8WTR4 605 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 TP53INP1Q96A56 240 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 VWCEQ96DN2 955 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 HHIPQ96QV1 700 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 MMP19Q99542 508 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 POP1Q99575 1024 aaKnown RBP6.53□□□□□ -1.36
PTPN4-210ENST00000485247 NOL10Q9BSC4 688 aaKnown RBP6.53□□□□□ -1.36
PTPN4-210ENST00000485247 TANGO6Q9C0B7 1094 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 WNT8AQ9H1J5 351 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 SRA1Q9HD15 236 aaKnown RBP6.53□□□□□ -1.36
PTPN4-210ENST00000485247 SH2B1Q9NRF2 756 aaPredicted RBP6.53□□□□□ -1.36
PTPN4-210ENST00000485247 AATFQ9NY61 560 aaKnown RBP eCLIP6.53□□□□□ -1.36
PTPN4-210ENST00000485247 HOXC10Q9NYD6 342 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 ZHX1Q9UKY1 873 aaPredicted RBP6.53□□□□□ -1.36
PTPN4-210ENST00000485247 FAM184BQ9ULE4 1060 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 ZNF318Q5VUA4 2279 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 ROBO3Q96MS0 1386 aa6.53□□□□□ -1.36
PTPN4-210ENST00000485247 FLT1P17948 1338 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 CFAP54Q96N23 3096 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 F8W735 103 aaPredicted RBP6.52□□□□□ -1.37
PTPN4-210ENST00000485247 H3BQ06 376 aaPredicted RBP6.52□□□□□ -1.37
PTPN4-210ENST00000485247 DUSP11O75319 330 aaKnown RBP6.52□□□□□ -1.37
PTPN4-210ENST00000485247 FAM13AO94988 1023 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 HLA-DOAP06340 250 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 H2AFB1P0C5Y9 115 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 H2AFB2P0C5Z0 115 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 PCSK2P16519 638 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 CES1P23141 567 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 CST5P28325 142 aaPredicted RBP6.52□□□□□ -1.37
PTPN4-210ENST00000485247 CDC27P30260 824 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 CDC25BP30305 580 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 SERPINB4P48594 390 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 EXOSC9Q06265 439 aaKnown RBP6.52□□□□□ -1.37
PTPN4-210ENST00000485247 ECM1Q16610 540 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 CCDC27Q2M243 656 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 PRSS36Q5K4E3 855 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 XP32Q5T750 250 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 PI16Q6UXB8 463 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 ERMP1Q7Z2K6 904 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 NOC4LQ9BVI4 516 aaKnown RBP6.52□□□□□ -1.37
PTPN4-210ENST00000485247 MRPL18Q9H0U6 180 aaKnown RBP6.52□□□□□ -1.37
PTPN4-210ENST00000485247 TRPV6Q9H1D0 765 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 SPC25Q9HBM1 224 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 KCNK4Q9NYG8 393 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 FOXD3Q9UJU5 478 aaPredicted RBP6.52□□□□□ -1.37
PTPN4-210ENST00000485247 MTUS1Q9ULD2 1270 aa6.52□□□□□ -1.37
PTPN4-210ENST00000485247 BRWD1Q9NSI6 2320 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 PDS5AQ29RF7 1337 aaKnown RBP6.51□□□□□ -1.37
PTPN4-210ENST00000485247 FANCIQ9NVI1 1328 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 USP34Q70CQ2 3546 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 CACNA1FO60840 1977 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 TRANK1O15050 2925 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 KIF28PB7ZC32 967 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 EREGO14944 169 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 ADCY6O43306 1168 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 B4GALT4O60513 344 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 TNFRSF21O75509 655 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 FLOT1O75955 427 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 CIAO1O76071 339 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 WISP1O95388 367 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 BAG3O95817 575 aa6.51□□□□□ -1.37
PTPN4-210ENST00000485247 SNAI1O95863 264 aaPredicted RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms