RNA–Protein interactions for RNA: ENST00000481019.5

PTPRF-213, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 459 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-213ENST00000481019 C17orf102A2RUQ5 167 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 CCNT1O60563 726 aaKnown RBP13.84□□□□□ -0.19
PTPRF-213ENST00000481019 FXR1P51114 621 aaKnown RBP eCLIP13.84□□□□□ -0.19
PTPRF-213ENST00000481019 HMGN5P82970 282 aaKnown RBP13.84□□□□□ -0.19
PTPRF-213ENST00000481019 UGCGQ16739 394 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 TCTN1Q2MV58 587 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 SWSAP1Q6NVH7 229 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 MOXD1Q6UVY6 613 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 B3GNT9Q6UX72 402 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 POTEDQ86YR6 584 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 TDHQ8IZJ6 230 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 FBXO18Q8NFZ0 1043 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 TRAPPC12Q8WVT3 735 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 HAS1Q92839 578 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 GLG1Q92896 1179 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.84□□□□□ -0.194e-24■□□□□ 8.4
PTPRF-213ENST00000481019 SMARCAD1Q9H4L7 1026 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 KCNMB3Q9NPA1 279 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 TBC1D22BQ9NU19 505 aa13.84□□□□□ -0.19
PTPRF-213ENST00000481019 CHMP2AO43633 222 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 IQCF3P0C7M6 154 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 GJB2P29033 226 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 STAT5BP51692 787 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 PTK7Q13308 1070 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 TRIM29Q14134 588 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 MBTPS1Q14703 1052 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 TMEM240Q5SV17 173 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 LRCH2Q5VUJ6 765 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 PPP4R3AQ6IN85 833 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 ZNF746Q6NUN9 644 aaPredicted RBP13.83□□□□□ -0.2
PTPRF-213ENST00000481019 PLPPR4Q7Z2D5 763 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 SERINC5Q86VE9 423 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 FAM184AQ8NB25 1140 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 TET1Q8NFU7 2136 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 ATP6V0A1Q93050 837 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 ERAP1Q9NZ08 941 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 VAV3Q9UKW4 847 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 ZNF215Q9UL58 517 aaPredicted RBP13.83□□□□□ -0.2
PTPRF-213ENST00000481019 NOD1Q9Y239 953 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 KIF3AQ9Y496 699 aa13.83□□□□□ -0.2
PTPRF-213ENST00000481019 ZBTB42B2RXF5 422 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 EML1O00423 815 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 ZNF862O60290 1169 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 GAS7O60861 476 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 CKBP12277 381 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 INSRRP14616 1297 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 IGBP1P78318 339 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 PPFIA1Q13136 1202 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 CUL4AQ13619 759 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 NBR1Q14596 966 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 GRIK4Q16099 956 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 ZNF618Q5T7W0 954 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 MIS18BP1Q6P0N0 1132 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 ZNF365Q70YC5 407 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 DEFB128Q7Z7B8 93 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 TMEM199Q8N511 208 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 AFAP1L1Q8TED9 768 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 LRCH3Q96II8 777 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 RIT2Q99578 217 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 TEKT3Q9BXF9 490 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 BRMS1Q9HCU9 246 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 IL23AQ9NPF7 189 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 ZNF302Q9NR11 478 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 GABBR1Q9UBS5 961 aa13.82□□□□□ -0.2
PTPRF-213ENST00000481019 CIZ1Q9ULV3 898 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-213ENST00000481019 CHD9Q3L8U1 2897 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 PITPNM1O00562 1244 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 BACH1O14867 736 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 NBNO60934 754 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 ATP2B1P20020 1258 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 KRT76Q01546 638 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 RBL2Q08999 1139 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 PPIGQ13427 754 aaKnown RBP eCLIP13.81□□□□□ -0.25e-7■■□□□ 13.4
PTPRF-213ENST00000481019 FAM109BQ6ICB4 259 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-213ENST00000481019 TRMT1LQ7Z2T5 733 aaKnown RBP13.81□□□□□ -0.2
PTPRF-213ENST00000481019 TMEM60Q9H2L4 133 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 AZI2Q9H6S1 392 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 CXXC1Q9P0U4 656 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-213ENST00000481019 TRPC6Q9Y210 931 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 PCDHA10Q9Y5I2 948 aa13.81□□□□□ -0.2
PTPRF-213ENST00000481019 MAFBQ9Y5Q3 323 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-213ENST00000481019 SIP14410 1827 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 A0A1W2PPC1 479 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 POTEB3A0JP26 581 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 MBLAC1A4D2B0 266 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-213ENST00000481019 TMEM150BA6NC51 233 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 WDR64B1ANS9 1081 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 STBD1O95210 358 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 PSAPP07602 524 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 SELPP16109 830 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 GCFC2P16383 781 aaKnown RBP13.8□□□□□ -0.2
PTPRF-213ENST00000481019 THPOP40225 353 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 TOB1P50616 345 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-213ENST00000481019 SPIRE1Q08AE8 756 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 BFSP2Q13515 415 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 RASIP1Q5U651 963 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 PDXDC2PQ6P474 469 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 POTEBQ6S5H4 581 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 LRRC8DQ7L1W4 858 aa13.8□□□□□ -0.2
PTPRF-213ENST00000481019 SMAP1Q8IYB5 467 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms