RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 PITPNM2Q9BZ72 1349 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 PLIN4Q96Q06 1357 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 ECM29Q5VYK3 1845 aa6.39□□□□□ -1.39
VPS41-211ENST00000466017 CYP2D7A0A087X1C5 515 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 CCDC196A0A1B0GTZ2 297 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 ANKRD33BA6NCL7 494 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 GLTPD2A6NH11 291 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 DDTLA6NHG4 134 aaPredicted RBP6.38□□□□□ -1.39
VPS41-211ENST00000466017 TSPY2A6NKD2 308 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 SMIM22K7EJ46 135 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 RANBP6O60518 1105 aaKnown RBP6.38□□□□□ -1.39
VPS41-211ENST00000466017 PAGE1O75459 146 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 BMP3P12645 472 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 LIG1P18858 919 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 FSTP19883 344 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 HMGN5P82970 282 aaKnown RBP6.38□□□□□ -1.39
VPS41-211ENST00000466017 FGD1P98174 961 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 GPR162Q16538 588 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 TMEM67Q5HYA8 995 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 RCSD1Q6JBY9 416 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 APOA5Q6Q788 366 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 USP50Q70EL3 339 aaPredicted RBP6.38□□□□□ -1.39
VPS41-211ENST00000466017 SND1Q7KZF4 910 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS41-211ENST00000466017 APOBEC3FQ8IUX4 373 aaKnown RBP6.38□□□□□ -1.39
VPS41-211ENST00000466017 ZFPM1Q8IX07 1006 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 FAM20CQ8IXL6 584 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 C2CD4AQ8NCU7 369 aaPredicted RBP6.38□□□□□ -1.39
VPS41-211ENST00000466017 SMG8Q8ND04 991 aaKnown RBP6.38□□□□□ -1.39
VPS41-211ENST00000466017 UTP4Q969X6 686 aaKnown RBP6.38□□□□□ -1.39
VPS41-211ENST00000466017 HOOK2Q96ED9 719 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 MYRFLQ96LU7 910 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 UBAC1Q9BSL1 405 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 CCDC86Q9H6F5 360 aaKnown RBP6.38□□□□□ -1.39
VPS41-211ENST00000466017 C7orf69Q9H7B7 122 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 RNF181Q9P0P0 153 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 RAXQ9Y2V3 346 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 PCDHAC2Q9Y5I4 1007 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 ZNF541Q9H0D2 1346 aa6.38□□□□□ -1.39
VPS41-211ENST00000466017 DDX60LQ5H9U9 1706 aaKnown RBP6.38□□□□□ -1.39
VPS41-211ENST00000466017 LAMB1P07942 1786 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 CNTNAP1P78357 1384 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 TNKSO95271 1327 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 KLF18A0A0U1RQI7 1052 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 CCDC69A6NI79 296 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 ZBTB43O43298 467 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 ZNF862O60290 1169 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 DDAH1O94760 285 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 DDNO94850 711 aaPredicted RBP6.37□□□□□ -1.39
VPS41-211ENST00000466017 LARGE1O95461 756 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 HSP90AA1P07900 732 aaKnown RBP6.37□□□□□ -1.39
VPS41-211ENST00000466017 TSPY3P0CV98 308 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 TSPY8P0CW00 308 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 PDCP20941 246 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 SHMT1P34896 483 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 GNAQP50148 359 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 APOBRQ0VD83 1088 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 ST3GAL1Q11201 340 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 SCRN1Q12765 414 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 TROAPQ12815 778 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 PICALMQ13492 652 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 KIF4BQ2VIQ3 1234 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 NBPF9Q3BBW0 867 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 RRP12Q5JTH9 1297 aaKnown RBP6.37□□□□□ -1.39
VPS41-211ENST00000466017 XP32Q5T750 250 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 IFIT1BQ5T764 474 aaKnown RBP6.37□□□□□ -1.39
VPS41-211ENST00000466017 CPLX2Q6PUV4 134 aaKnown RBP6.37□□□□□ -1.39
VPS41-211ENST00000466017 DTHD1Q6ZMT9 781 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 CLEC17AQ6ZS10 378 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 CHST3Q7LGC8 479 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 PDZD3Q86UT5 571 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 FAM177A1Q8N128 213 aaPredicted RBP6.37□□□□□ -1.39
VPS41-211ENST00000466017 ENAHQ8N8S7 591 aaPredicted RBP6.37□□□□□ -1.39
VPS41-211ENST00000466017 FANCBQ8NB91 859 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 GRIN3AQ8TCU5 1115 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 DYNLL2Q96FJ2 89 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 TCEANC2Q96MN5 208 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 TEPSINQ96N21 525 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 LRRC2Q9BYS8 371 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 GZF1Q9H116 711 aaPredicted RBP6.37□□□□□ -1.39
VPS41-211ENST00000466017 KANSL2Q9H9L4 492 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 IL17RBQ9NRM6 502 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 RBM28Q9NW13 759 aaKnown RBP6.37□□□□□ -1.39
VPS41-211ENST00000466017 MTMR4Q9NYA4 1195 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 NYAP2Q9P242 653 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 SAP30BPQ9UHR5 308 aaKnown RBP6.37□□□□□ -1.39
VPS41-211ENST00000466017 ZNF112Q9UJU3 913 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 PPP1R9AQ9ULJ8 1098 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 SMC3Q9UQE7 1217 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 SLC12A7Q9Y666 1083 aa6.37□□□□□ -1.39
VPS41-211ENST00000466017 NAV1Q8NEY1 1877 aa6.36□□□□□ -1.39
VPS41-211ENST00000466017 IQCA1LA6NCM1 817 aa6.36□□□□□ -1.39
VPS41-211ENST00000466017 UNCXA6NJT0 531 aa6.36□□□□□ -1.39
VPS41-211ENST00000466017 PRDM1O75626 825 aa6.36□□□□□ -1.39
VPS41-211ENST00000466017 CDKL5O76039 1030 aa6.36□□□□□ -1.39
VPS41-211ENST00000466017 SNHG28P0DPA3 235 aa6.36□□□□□ -1.39
VPS41-211ENST00000466017 TOP1P11387 765 aaKnown RBP6.36□□□□□ -1.39
VPS41-211ENST00000466017 IFNAR1P17181 557 aa6.36□□□□□ -1.39
VPS41-211ENST00000466017 EPS15P42566 896 aa6.36□□□□□ -1.39
VPS41-211ENST00000466017 SOX4Q06945 474 aaPredicted RBP6.36□□□□□ -1.39
VPS41-211ENST00000466017 TCP10Q12799 353 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms