RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 TTLL11Q8NHH1 800 aa5.84□□□□□ -1.47
VPS29-202ENST00000447578 HNRNPLLQ8WVV9 542 aaKnown RBP5.84□□□□□ -1.47
VPS29-202ENST00000447578 ZFP69BQ9UJL9 534 aa5.84□□□□□ -1.47
VPS29-202ENST00000447578 TCAF1Q9Y4C2 921 aa5.84□□□□□ -1.47
VPS29-202ENST00000447578 CCDC85CA6NKD9 419 aa5.83□□□□□ -1.48
VPS29-202ENST00000447578 AGRPO00253 132 aa5.83□□□□□ -1.48
VPS29-202ENST00000447578 KNG1P01042 644 aa5.83□□□□□ -1.48
VPS29-202ENST00000447578 FAHP16930 419 aa5.83□□□□□ -1.48
VPS29-202ENST00000447578 SELENOPP49908 381 aa5.83□□□□□ -1.48
VPS29-202ENST00000447578 PAN2Q504Q3 1202 aaKnown RBP5.83□□□□□ -1.48
VPS29-202ENST00000447578 RALYLQ86SE5 291 aaKnown RBP5.83□□□□□ -1.48
VPS29-202ENST00000447578 DEPDC7Q96QD5 511 aa5.83□□□□□ -1.48
VPS29-202ENST00000447578 EPN3Q9H201 632 aa5.83□□□□□ -1.48
VPS29-202ENST00000447578 PTPN22Q9Y2R2 807 aa5.83□□□□□ -1.48
VPS29-202ENST00000447578 BLACEA4D250 179 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 MUSKO15146 869 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 FOXS1O43638 330 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 FZD7O75084 574 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 FBXO21O94952 628 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 PFKPQ01813 784 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 NTRK3Q16288 839 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 LBX2Q6XYB7 198 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 LRP10Q7Z4F1 713 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 RNPC3Q96LT9 517 aaKnown RBP5.82□□□□□ -1.48
VPS29-202ENST00000447578 LRRC37BQ96QE4 947 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 SNTG2Q9NY99 539 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 ARHGAP20Q9P2F6 1191 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 HS3ST3A1Q9Y663 406 aa5.82□□□□□ -1.48
VPS29-202ENST00000447578 FAM221BA6H8Z2 402 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 CYR61O00622 381 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 PRODHO43272 600 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 IL18BPO95998 194 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 GNAT1P11488 350 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 IBSPP21815 317 aaPredicted RBP5.81□□□□□ -1.48
VPS29-202ENST00000447578 GRK2P25098 689 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 CSF2RBP32927 897 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 GRK3P35626 688 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 RNF187Q5TA31 235 aaPredicted RBP5.81□□□□□ -1.48
VPS29-202ENST00000447578 CD276Q5ZPR3 534 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 TCTN3Q6NUS6 607 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 UHMK1Q8TAS1 419 aaKnown RBP5.81□□□□□ -1.48
VPS29-202ENST00000447578 AJUBAQ96IF1 538 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 LMF1Q96S06 567 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 TACO1Q9BSH4 297 aaKnown RBP5.81□□□□□ -1.48
VPS29-202ENST00000447578 KCND1Q9NSA2 647 aa5.81□□□□□ -1.48
VPS29-202ENST00000447578 ACOT7O00154 380 aa5.8□□□□□ -1.48
VPS29-202ENST00000447578 ZNF888P0CJ79 500 aaPredicted RBP5.8□□□□□ -1.48
VPS29-202ENST00000447578 IGBP1P78318 339 aa5.8□□□□□ -1.48
VPS29-202ENST00000447578 HSP90AA2PQ14568 343 aaPredicted RBP5.8□□□□□ -1.48
VPS29-202ENST00000447578 PTPROQ16827 1216 aa5.8□□□□□ -1.48
VPS29-202ENST00000447578 RSPO2Q6UXX9 243 aaPredicted RBP5.8□□□□□ -1.48
VPS29-202ENST00000447578 DCAF4Q8WV16 495 aa5.8□□□□□ -1.48
VPS29-202ENST00000447578 CCDC113Q9H0I3 377 aa5.8□□□□□ -1.48
VPS29-202ENST00000447578 ING1Q9UK53 422 aaPredicted RBP5.8□□□□□ -1.48
VPS29-202ENST00000447578 SLC4A7Q9Y6M7 1214 aa5.8□□□□□ -1.48
VPS29-202ENST00000447578 ENPP3O14638 875 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 ENO2P09104 434 aaPredicted RBP5.79□□□□□ -1.48
VPS29-202ENST00000447578 SPIRE1Q08AE8 756 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 KLF10Q13118 480 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 RASA3Q14644 834 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 HABP4Q5JVS0 413 aaKnown RBP5.79□□□□□ -1.48
VPS29-202ENST00000447578 YOD1Q5VVQ6 348 aaPredicted RBP5.79□□□□□ -1.48
VPS29-202ENST00000447578 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.79□□□□□ -1.48
VPS29-202ENST00000447578 GIMAP8Q8ND71 665 aaPredicted RBP5.79□□□□□ -1.48
VPS29-202ENST00000447578 OSBP2Q969R2 916 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 GPATCH3Q96I76 525 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 DNAJC7Q99615 494 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 AARSD1Q9BTE6 412 aaKnown RBP5.79□□□□□ -1.48
VPS29-202ENST00000447578 CD244Q9BZW8 370 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 PCED1AQ9H1Q7 454 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 SEC61A2Q9H9S3 476 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 ARHGEF4Q9NR80 690 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 DSEQ9UL01 958 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 TESMINQ9Y4I5 508 aa5.79□□□□□ -1.48
VPS29-202ENST00000447578 hCG_2014768A0A024R1R8 64 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 ZNF839A8K0R7 811 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 SOD2P04179 222 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 CHGBP05060 677 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 IFRD2Q12894 506 aaPredicted RBP5.78□□□□□ -1.48
VPS29-202ENST00000447578 DDR2Q16832 855 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 KIZQ2M2Z5 673 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 NSMFQ6X4W1 530 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 USP51Q70EK9 711 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 ASXL2Q76L83 1435 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 TAX1BP1Q86VP1 789 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 ZCRB1Q8TBF4 217 aaKnown RBP5.78□□□□□ -1.48
VPS29-202ENST00000447578 KATNBL1Q9H079 304 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 SEMA4AQ9H3S1 761 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 IPPKQ9H8X2 491 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 SLC39A2Q9NP94 309 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 ZFR2Q9UPR6 939 aaKnown RBP5.78□□□□□ -1.48
VPS29-202ENST00000447578 ABCC9O60706 1549 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 MYO15BQ96JP2 1530 aa5.78□□□□□ -1.48
VPS29-202ENST00000447578 SCRIBQ14160 1630 aa5.77□□□□□ -1.48
VPS29-202ENST00000447578 TCRBV5S4A2TA0A5A2 114 aa5.77□□□□□ -1.49
VPS29-202ENST00000447578 H0Y858 1186 aa5.77□□□□□ -1.49
VPS29-202ENST00000447578 PPP1R12AO14974 1030 aaPredicted RBP5.77□□□□□ -1.49
VPS29-202ENST00000447578 PABPC1P11940 636 aaKnown RBP5.77□□□□□ -1.49
VPS29-202ENST00000447578 EPHA5P54756 1037 aa5.77□□□□□ -1.49
VPS29-202ENST00000447578 ANAPC15P60006 121 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms