RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 PPP2R5EQ16537 467 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 MCF2L2Q86YR7 1114 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 NKX2-3Q8TAU0 364 aa20.21■□□□□ 0.83
USP48-204ENST00000400301 PSMD14O00487 310 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 TBC1D8O95759 1140 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 DLATP10515 647 aaKnown RBP20.2■□□□□ 0.82
USP48-204ENST00000400301 TNNI1P19237 187 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 CLUL1Q15846 466 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 ARHGEF16Q5VV41 709 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 ZNF365Q70YC5 407 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 PBKQ96KB5 322 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 GGCXP38435 758 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 SF3A3Q12874 501 aaKnown RBP eCLIP20.2■□□□□ 0.82
USP48-204ENST00000400301 CABS1Q96KC9 395 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 ERGIC2Q96RQ1 377 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 SAMD15Q9P1V8 674 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 RRP15Q9Y3B9 282 aaKnown RBP20.2■□□□□ 0.82
USP48-204ENST00000400301 FXR2P51116 673 aaKnown RBP eCLIP20.2■□□□□ 0.822e-8■□□□□ 9.6
USP48-204ENST00000400301 MESDQ14696 234 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 DENND2CQ68D51 928 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 CDC42EP5Q6NZY7 148 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 USTQ9Y2C2 406 aa20.2■□□□□ 0.82
USP48-204ENST00000400301 AFDNP55196 1824 aaKnown RBP20.19■□□□□ 0.82
USP48-204ENST00000400301 PACSIN2Q9UNF0 486 aaPredicted RBP20.19■□□□□ 0.82
USP48-204ENST00000400301 GRB10Q13322 594 aa20.19■□□□□ 0.82
USP48-204ENST00000400301 E2F4Q16254 413 aa20.19■□□□□ 0.82
USP48-204ENST00000400301 OTUD6AQ7L8S5 288 aa20.19■□□□□ 0.82
USP48-204ENST00000400301 CEP83Q9Y592 693 aa20.19■□□□□ 0.82
USP48-204ENST00000400301 ESYT3A0FGR9 886 aa20.19■□□□□ 0.82
USP48-204ENST00000400301 LIN9Q5TKA1 542 aa20.19■□□□□ 0.82
USP48-204ENST00000400301 UHMK1Q8TAS1 419 aaKnown RBP20.19■□□□□ 0.82
USP48-204ENST00000400301 COG1Q8WTW3 980 aa20.19■□□□□ 0.82
USP48-204ENST00000400301 WNT7AO00755 349 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 ATP2A1O14983 1001 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 ECE2O60344 883 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 DPH6Q7L8W6 267 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 DNAJC7Q99615 494 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 CYTH3O43739 400 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 SORBS3O60504 671 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 PLEKP08567 350 aaPredicted RBP20.18■□□□□ 0.82
USP48-204ENST00000400301 ALS2CLQ60I27 953 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 GIMAP7Q8NHV1 300 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 PNKPQ96T60 521 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 TYW1Q9NV66 732 aaKnown RBP20.18■□□□□ 0.82
USP48-204ENST00000400301 NNTQ13423 1086 aa20.18■□□□□ 0.82
USP48-204ENST00000400301 DYDC2Q96IM9 177 aa20.17■□□□□ 0.82
USP48-204ENST00000400301 LRRC1Q9BTT6 524 aa20.17■□□□□ 0.82
USP48-204ENST00000400301 UBE2TQ9NPD8 197 aaPredicted RBP20.17■□□□□ 0.82
USP48-204ENST00000400301 RGL1Q9NZL6 768 aa20.17■□□□□ 0.82
USP48-204ENST00000400301 POLLQ9UGP5 575 aa20.17■□□□□ 0.82
USP48-204ENST00000400301 CCDC93Q567U6 631 aa20.17■□□□□ 0.82
USP48-204ENST00000400301 SLC27A3Q5K4L6 730 aa20.17■□□□□ 0.82
USP48-204ENST00000400301 MPHOSPH6Q99547 160 aaKnown RBP20.17■□□□□ 0.82
USP48-204ENST00000400301 DNAJC12Q9UKB3 198 aa20.17■□□□□ 0.82
USP48-204ENST00000400301 MAGOHBQ96A72 148 aaKnown RBP20.17■□□□□ 0.82
USP48-204ENST00000400301 ACCSQ96QU6 501 aa20.17■□□□□ 0.82
USP48-204ENST00000400301 LACRTQ9GZZ8 138 aa20.17■□□□□ 0.82
USP48-204ENST00000400301 CYP2C19P33261 490 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 FUT2Q10981 343 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 LLGL1Q15334 1064 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 GLE1Q53GS7 698 aaKnown RBP20.16■□□□□ 0.82
USP48-204ENST00000400301 DUSP10Q9Y6W6 482 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 DMP1Q13316 513 aaPredicted RBP20.16■□□□□ 0.82
USP48-204ENST00000400301 TNFAIP1Q13829 316 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 PRKG1Q13976 671 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 POMGNT1Q8WZA1 660 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 FUT8Q9BYC5 575 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 TMOD4Q9NZQ9 345 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 PLAGL2Q9UPG8 496 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 TACC3Q9Y6A5 838 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 CHD2O14647 1828 aaKnown RBP20.16■□□□□ 0.82
USP48-204ENST00000400301 KDM3BQ7LBC6 1761 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 TARSL2A2RTX5 802 aaKnown RBP20.16■□□□□ 0.82
USP48-204ENST00000400301 RGS16O15492 202 aaPredicted RBP20.16■□□□□ 0.82
USP48-204ENST00000400301 PDE6CP51160 858 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 IKBKGQ9Y6K9 419 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 RGPD2P0DJD1 1756 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 SSU72P8A0A1W2PR75 194 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 NDUFB10O96000 172 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 LIG3P49916 1009 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 WHAMMQ8TF30 809 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 EIF2AK1Q9BQI3 630 aaKnown RBP20.16■□□□□ 0.82
USP48-204ENST00000400301 DAAM1Q9Y4D1 1078 aa20.16■□□□□ 0.82
USP48-204ENST00000400301 A0A1W2PQJ5 194 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 GTF2A1P52655 376 aaPredicted RBP20.15■□□□□ 0.82
USP48-204ENST00000400301 AOC3Q16853 763 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 HOOK2Q96ED9 719 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 ARHGAP25P42331 645 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 VPS41P49754 854 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 RSRC2Q7L4I2 434 aaKnown RBP20.15■□□□□ 0.82
USP48-204ENST00000400301 SEMA6BQ9H3T3 888 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 TMEM206Q9H813 350 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 SMARCAL1Q9NZC9 954 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 PPFIA4O75335 1185 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 MXI1P50539 228 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 CCDC91Q7Z6B0 441 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 PARP2Q9UGN5 583 aa20.15■□□□□ 0.82
USP48-204ENST00000400301 CROCCP2Q86T23 111 aa20.14■□□□□ 0.82
USP48-204ENST00000400301 FAM160B2Q86V87 743 aa20.14■□□□□ 0.82
USP48-204ENST00000400301 C1orf112Q9NSG2 853 aa20.14■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms