RNA–Protein interactions for RNA: ENST00000237289.8

TNFAIP3-201, Transcript of TNF alpha induced protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFAIP3, Length 4,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFAIP3-201ENST00000237289 HOXC6P09630 235 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 FSCN1Q16658 493 aaKnown RBP12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 SYCP3Q8IZU3 236 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 SLC5A5Q92911 643 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 CUEDC2Q9H467 287 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 SERTAD1Q9UHV2 236 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 DDX41Q9UJV9 622 aaKnown RBP12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 TRPM7Q96QT4 1865 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 POTEB3A0JP26 581 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 PP2D1A8MPX8 630 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 GOLGA6L19H0YKK7 550 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 PPFIA4O75335 1185 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 POTEBQ6S5H4 581 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 PXYLP1Q8TE99 480 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 STAMQ92783 540 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 BICD1Q96G01 975 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 FBXO2Q9UK22 296 aaPredicted RBP12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 RPTORQ8N122 1335 aa12.4□□□□□ -0.42
TNFAIP3-201ENST00000237289 PLCG1P19174 1290 aa12.4□□□□□ -0.43
TNFAIP3-201ENST00000237289 XKR3Q5GH77 459 aa12.4□□□□□ -0.43
TNFAIP3-201ENST00000237289 DEFB118Q96PH6 123 aa12.4□□□□□ -0.43
TNFAIP3-201ENST00000237289 BHMT2Q9H2M3 363 aa12.4□□□□□ -0.43
TNFAIP3-201ENST00000237289 PES1O00541 588 aaKnown RBP12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 PGK1P00558 417 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 SUPT20HL2P0C7V6 817 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 IRF5Q13568 498 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 DNAJC25-GNG10A0A024R161 153 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 FOXN1O15353 648 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 ATP9AO75110 1047 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 GJC2Q5T442 439 aaPredicted RBP12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 MAGEF1Q9HAY2 307 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 PRKAG2Q9UGJ0 569 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 R3HCC1Q9Y3T6 440 aaKnown RBP12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 POTEFA5A3E0 1075 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 TPM2P07951 284 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 CCDC192P0DO97 292 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 ICAM3P32942 547 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 NDUFA8P51970 172 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 HERC4Q5GLZ8 1057 aaPredicted RBP12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 FBXO46Q6PJ61 603 aaPredicted RBP12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 POTEGQ6S5H5 508 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 POTEEQ6S8J3 1075 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 MYCT1Q8N699 235 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 ANKRD20A12PQ8NF67 263 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 TRIB2Q92519 343 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 AKT3Q9Y243 479 aa12.39□□□□□ -0.43
TNFAIP3-201ENST00000237289 BIN1O00499 593 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 DUSP11O75319 330 aaKnown RBP12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 PLA2G4BP0C869 781 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 MAMDC4Q6UXC1 1216 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 NFASCO94856 1347 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 SIPA1L1O43166 1804 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 BEX3Q00994 111 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 CACNB2Q08289 660 aaPredicted RBP12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 PPFIA1Q13136 1202 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 KCNMB3Q9NPA1 279 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 LARSQ9P2J5 1176 aaKnown RBP12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 DDX20Q9UHI6 824 aaKnown RBP12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 A0A087WWV3 80 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 M0R2N6 131 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 ADAMTS3O15072 1205 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 SNAI1O95863 264 aaPredicted RBP12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 CDK11BP21127 795 aaKnown RBP12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 YWHABP31946 246 aaKnown RBP12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 PTPAQ15257 358 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 PTPN22Q9Y2R2 807 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 H3BRB1 525 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 HBP1O60381 514 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 RPA1P27694 616 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 PRKCEQ02156 737 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 RESP18Q5W5W9 173 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 MTG1Q9BT17 334 aaPredicted RBP12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 TCHPQ9BT92 498 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 CCSER1Q9C0I3 900 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 TUT1Q9H6E5 874 aaKnown RBP12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 GJD2Q9UKL4 321 aa12.38□□□□□ -0.43
TNFAIP3-201ENST00000237289 PHIPQ8WWQ0 1821 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 SLC26A2P50443 739 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 MCM6Q14566 821 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 ISM2Q6H9L7 571 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 KLHL10Q6JEL2 608 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 DEPTORQ8TB45 409 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 SHISA4Q96DD7 197 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 GTPBP4Q9BZE4 634 aaKnown RBP12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 FAM49AQ9H0Q0 323 aaPredicted RBP12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 STARD7Q9NQZ5 370 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 LMBRD1Q9NUN5 540 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 E9PMD0 336 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 SMPD1P17405 629 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 PPP2R5CQ13362 524 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 KLHL40Q2TBA0 621 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 MTMR9Q96QG7 549 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 TSG101Q99816 390 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 CFHR5Q9BXR6 569 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 TLR3O15455 904 aaKnown RBP12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 PSMD10O75832 226 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 DDIT3P35638 169 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 GHRHRQ02643 423 aa12.37□□□□□ -0.43
TNFAIP3-201ENST00000237289 KRBA2Q6ZNG9 492 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 142.2 ms