RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 HAS3O00219 553 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 TIMP1P01033 207 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 GNAT1P11488 350 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 BMP8BP34820 402 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 FOSBP53539 338 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 KRT76Q01546 638 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 ITGB3BPQ13352 177 aaPredicted RBP14.72□□□□□ -0.05
CLK3-224ENST00000568605 BFSP2Q13515 415 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 GNL2Q13823 731 aaKnown RBP14.72□□□□□ -0.05
CLK3-224ENST00000568605 PTGISQ16647 500 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 INF2Q27J81 1249 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 UTP14CQ5TAP6 766 aaKnown RBP14.72□□□□□ -0.05
CLK3-224ENST00000568605 FAM160B1Q5W0V3 765 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 PIK3AP1Q6ZUJ8 805 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 SH3RF1Q7Z6J0 888 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 SMAP1Q8IYB5 467 aaPredicted RBP14.72□□□□□ -0.05
CLK3-224ENST00000568605 DIS3L2Q8IYB7 885 aaKnown RBP14.72□□□□□ -0.05
CLK3-224ENST00000568605 GLG1Q92896 1179 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 TMX3Q96JJ7 454 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 C16orf70Q9BSU1 422 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 HIPK3Q9H422 1215 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 SMARCAD1Q9H4L7 1026 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 GJB4Q9NTQ9 266 aa14.72□□□□□ -0.05
CLK3-224ENST00000568605 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.72□□□□□ -0.05
CLK3-224ENST00000568605 CYP3A7-CYP3A51PA0A087WV96 503 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 TRIM43BA6NCK2 446 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 GAS7O60861 476 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 CYP3A7P24462 503 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 ACTR2P61160 394 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 FPGSQ05932 587 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 LETM2Q2VYF4 491 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 Q4G0T1 1027 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 ZNF746Q6NUN9 644 aaPredicted RBP14.71□□□□□ -0.05
CLK3-224ENST00000568605 MIS18BP1Q6P0N0 1132 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 TRIM50Q86XT4 487 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 TMEM199Q8N511 208 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 CAGE1Q8TC20 777 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 BADQ92934 168 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 TRIM43Q96BQ3 446 aaPredicted RBP14.71□□□□□ -0.05
CLK3-224ENST00000568605 PPP1R12CQ9BZL4 782 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 TRPV6Q9H1D0 765 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 BCAS3Q9H6U6 928 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 TRMT13Q9NUP7 481 aaKnown RBP14.71□□□□□ -0.05
CLK3-224ENST00000568605 HDAC6Q9UBN7 1215 aa14.71□□□□□ -0.05
CLK3-224ENST00000568605 DDX25Q9UHL0 483 aaKnown RBP14.71□□□□□ -0.05
CLK3-224ENST00000568605 GSTTP1A0A1W2PQM5 241 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 C17orf102A2RUQ5 167 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 PITPNM1O00562 1244 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 DTNBO60941 627 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 TDP2O95551 362 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 SLC26A2P50443 739 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 PPIGQ13427 754 aaKnown RBP eCLIP14.7□□□□□ -0.064e-9■■■□□ 15.8
CLK3-224ENST00000568605 LRCH2Q5VUJ6 765 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 PPP4R3AQ6IN85 833 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 MFSD5Q6N075 450 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 TDHQ8IZJ6 230 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 OXER1Q8TDS5 423 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 LENG9Q96B70 501 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 RIT2Q99578 217 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 TEKT3Q9BXF9 490 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 COLQQ9Y215 455 aaPredicted RBP14.7□□□□□ -0.06
CLK3-224ENST00000568605 PTPRSQ13332 1948 aa14.7□□□□□ -0.06
CLK3-224ENST00000568605 TET1Q8NFU7 2136 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 WDR64B1ANS9 1081 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 BACH1O14867 736 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 MSH4O15457 936 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 CCNT1O60563 726 aaKnown RBP14.69□□□□□ -0.06
CLK3-224ENST00000568605 LGR5O75473 907 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 CD2BP2O95400 341 aaKnown RBP14.69□□□□□ -0.06
CLK3-224ENST00000568605 SMIM10L2AP0DMW4 78 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 SMIM10L2BP0DMW5 78 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 SFNP31947 248 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 NR5A1Q13285 461 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 GDF6Q6KF10 455 aaPredicted RBP14.69□□□□□ -0.06
CLK3-224ENST00000568605 RETREG2Q8NC44 543 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 FBXO18Q8NFZ0 1043 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 SLC5A5Q92911 643 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 MBOAT7Q96N66 472 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 NOC4LQ9BVI4 516 aaKnown RBP14.69□□□□□ -0.06
CLK3-224ENST00000568605 PRO3102Q9H379 93 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 SMC3Q9UQE7 1217 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 SAMM50Q9Y512 469 aa14.69□□□□□ -0.06
CLK3-224ENST00000568605 NRCAMQ92823 1304 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 BTBD18B2RXH4 712 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 MARCH6O60337 910 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 PSAPP07602 524 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 CYP2C9P11712 490 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 STAT5BP51692 787 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 JAK3P52333 1124 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 GUCY1B3Q02153 619 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 PPFIA1Q13136 1202 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 PTK7Q13308 1070 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 PSRC1Q6PGN9 363 aaPredicted RBP14.68□□□□□ -0.06
CLK3-224ENST00000568605 PLPPR4Q7Z2D5 763 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 RDM1Q8NG50 284 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 AFAP1L1Q8TED9 768 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 PPP1R13LQ8WUF5 828 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 TNFRSF25Q93038 417 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 ATP6V0A1Q93050 837 aa14.68□□□□□ -0.06
CLK3-224ENST00000568605 FOXP1Q9H334 677 aaPredicted RBP14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms