RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 TEX2Q8IWB9 1127 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 ETNPPLQ8TBG4 499 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 ZDHHC15Q96MV8 337 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 MXD3Q9BW11 206 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 GANQ9H2C0 597 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 SALL4Q9UJQ4 1053 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 PCDHGC5Q9Y5F6 944 aa14.86□□□□□ -0.03
SHMT2-222ENST00000555774 MYH7BA7E2Y1 1941 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 USP17L15C9J2P7 530 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 USP17L13C9JLJ4 530 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 USP17L11C9JVI0 530 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 USP17L18D6R9N7 530 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 USP17L22D6RA61 530 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 USP17L17D6RBQ6 530 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 USP17L19D6RCP7 530 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 USP17L20D6RJB6 530 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 PHACTR2O75167 634 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 MED24O75448 989 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 NPM3O75607 178 aaKnown RBP14.85□□□□□ -0.03
SHMT2-222ENST00000555774 ZMYND10O75800 440 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 FKBP1AP62942 108 aaKnown RBP14.85□□□□□ -0.03
SHMT2-222ENST00000555774 USP17L24Q0WX57 530 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 USP17L6PQ6QN14 398 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 NELFCDQ8IXH7 590 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 CAVIN3Q969G5 261 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 FGFBP2Q9BYJ0 223 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 PLCB1Q9NQ66 1216 aa14.85□□□□□ -0.03
SHMT2-222ENST00000555774 BZW2Q9Y6E2 419 aaKnown RBP14.85□□□□□ -0.03
SHMT2-222ENST00000555774 CES2O00748 559 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 EEF2P13639 858 aaKnown RBP14.84□□□□□ -0.03
SHMT2-222ENST00000555774 ALDH1B1P30837 517 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 GGCXP38435 758 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 CRKP46108 304 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 MMP14P50281 582 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 ARHGAP4P98171 946 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 SPIRE1Q08AE8 756 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 C8orf74Q6P047 294 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 SYT2Q8N9I0 419 aaPredicted RBP14.84□□□□□ -0.03
SHMT2-222ENST00000555774 GJA10Q969M2 543 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 FAM20AQ96MK3 541 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 AMNQ9BXJ7 453 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 MYH4Q9Y623 1939 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 GOLGA8KD6RF30 607 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 AGPSO00116 658 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 MEIS2O14770 477 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 RPA1P27694 616 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 SCNN1DP51172 638 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 NAP1L1P55209 391 aaKnown RBP14.84□□□□□ -0.03
SHMT2-222ENST00000555774 HDLBPQ00341 1268 aaKnown RBP14.84□□□□□ -0.03
SHMT2-222ENST00000555774 ARSHQ5FYA8 562 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 ALS2CLQ60I27 953 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 GSPT2Q8IYD1 628 aaKnown RBP14.84□□□□□ -0.03
SHMT2-222ENST00000555774 GMCL1P1Q8NEA9 526 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 IDI2Q9BXS1 227 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 DNAJC18Q9H819 358 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 TBC1D7Q9P0N9 293 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 PI4KBQ9UBF8 816 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 DNM3Q9UQ16 869 aa14.84□□□□□ -0.03
SHMT2-222ENST00000555774 CALUO43852 315 aaPredicted RBP14.83□□□□□ -0.03
SHMT2-222ENST00000555774 OPA1O60313 960 aa14.83□□□□□ -0.03
SHMT2-222ENST00000555774 SREBF1P36956 1147 aa14.83□□□□□ -0.03
SHMT2-222ENST00000555774 KLHL30Q0D2K2 578 aa14.83□□□□□ -0.03
SHMT2-222ENST00000555774 NFIAQ12857 509 aa14.83□□□□□ -0.03
SHMT2-222ENST00000555774 RAPGEF1Q13905 1077 aa14.83□□□□□ -0.03
SHMT2-222ENST00000555774 GIT2Q14161 759 aa14.83□□□□□ -0.03
SHMT2-222ENST00000555774 BMT2Q1RMZ1 405 aa14.83□□□□□ -0.03
SHMT2-222ENST00000555774 CERKLQ49MI3 558 aaPredicted RBP14.83□□□□□ -0.03
SHMT2-222ENST00000555774 SND1Q7KZF4 910 aaKnown RBP eCLIP14.83□□□□□ -0.032e-6■■□□□ 11.8
SHMT2-222ENST00000555774 EPM2AIP1Q7L775 607 aaPredicted RBP14.83□□□□□ -0.03
SHMT2-222ENST00000555774 TBC1D5Q92609 795 aa14.83□□□□□ -0.03
SHMT2-222ENST00000555774 TMX4Q9H1E5 349 aaPredicted RBP14.83□□□□□ -0.03
SHMT2-222ENST00000555774 DMGDHQ9UI17 866 aaKnown RBP14.83□□□□□ -0.03
SHMT2-222ENST00000555774 NPHP3-ACAD11A0A0J9YXS1 232 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 G3V3G9 751 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 PDXKO00764 312 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 SLC16A3O15427 465 aaKnown RBP14.83□□□□□ -0.04
SHMT2-222ENST00000555774 NCK2O43639 380 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 BUB1O43683 1085 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 EPB41P11171 864 aaKnown RBP14.83□□□□□ -0.04
SHMT2-222ENST00000555774 NR2F2P24468 414 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 CIITAP33076 1130 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 KCNH2Q12809 1159 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 EZH2Q15910 746 aaKnown RBP14.83□□□□□ -0.04
SHMT2-222ENST00000555774 IFI16Q16666 785 aaKnown RBP14.83□□□□□ -0.04
SHMT2-222ENST00000555774 KNOP1Q1ED39 458 aaKnown RBP14.83□□□□□ -0.04
SHMT2-222ENST00000555774 DCAF8Q5TAQ9 597 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 MEI1Q5TIA1 1274 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 TATDN1Q6P1N9 297 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 TMEM179Q6ZVK1 233 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 PODNQ7Z5L7 613 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 CATSPER3Q86XQ3 398 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 IFT20Q8IY31 132 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 SEPT12Q8IYM1 358 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 ANKRD13CQ8N6S4 541 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 FAM76AQ8TAV0 307 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 GMCL1Q96IK5 515 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 SH3GL2Q99962 352 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 METTL14Q9HCE5 456 aaKnown RBP14.83□□□□□ -0.04
SHMT2-222ENST00000555774 FBXL5Q9UKA1 691 aa14.83□□□□□ -0.04
SHMT2-222ENST00000555774 HDAC9Q9UKV0 1011 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms