RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 NDUFV1P49821 464 aa19.55■□□□□ 0.72
VPS29-204ENST00000548259 PTPN5P54829 565 aa19.55■□□□□ 0.72
VPS29-204ENST00000548259 TRDNQ13061 729 aa19.55■□□□□ 0.72
VPS29-204ENST00000548259 NAALADL2Q58DX5 795 aa19.55■□□□□ 0.72
VPS29-204ENST00000548259 UTP14CQ5TAP6 766 aaKnown RBP19.55■□□□□ 0.72
VPS29-204ENST00000548259 SUGP1Q8IWZ8 645 aaKnown RBP19.55■□□□□ 0.72
VPS29-204ENST00000548259 EDAQ92838 391 aa19.55■□□□□ 0.72
VPS29-204ENST00000548259 GPR20Q99678 358 aa19.55■□□□□ 0.72
VPS29-204ENST00000548259 MAD2L2Q9UI95 211 aa19.55■□□□□ 0.72
VPS29-204ENST00000548259 ERICH2A1L162 156 aa19.54■□□□□ 0.72
VPS29-204ENST00000548259 PALM3A6NDB9 673 aaPredicted RBP19.54■□□□□ 0.72
VPS29-204ENST00000548259 PPP1R11O60927 126 aaPredicted RBP19.54■□□□□ 0.72
VPS29-204ENST00000548259 GHRP10912 638 aa19.54■□□□□ 0.72
VPS29-204ENST00000548259 XRRA1Q6P2D8 792 aa19.54■□□□□ 0.72
VPS29-204ENST00000548259 BMP8AQ7Z5Y6 402 aa19.54■□□□□ 0.72
VPS29-204ENST00000548259 NLRX1Q86UT6 975 aa19.54■□□□□ 0.72
VPS29-204ENST00000548259 LMBR1Q8WVP7 490 aa19.54■□□□□ 0.72
VPS29-204ENST00000548259 GPKOWQ92917 476 aaPredicted RBP eCLIP19.54■□□□□ 0.72
VPS29-204ENST00000548259 ZFP91Q96JP5 570 aaPredicted RBP19.54■□□□□ 0.72
VPS29-204ENST00000548259 SENP7Q9BQF6 1050 aa19.54■□□□□ 0.72
VPS29-204ENST00000548259 LNPKQ9C0E8 428 aa19.54■□□□□ 0.72
VPS29-204ENST00000548259 PNMA6FA0A0J9YX94 578 aa19.53■□□□□ 0.72
VPS29-204ENST00000548259 CUL5Q93034 780 aa19.53■□□□□ 0.72
VPS29-204ENST00000548259 P2RX5Q93086 422 aa19.53■□□□□ 0.72
VPS29-204ENST00000548259 CHRNA1P02708 482 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 ADAM17P78536 824 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 SP4Q02446 784 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 DLX2Q07687 328 aaPredicted RBP19.52■□□□□ 0.72
VPS29-204ENST00000548259 ADAM15Q13444 863 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 TRIM50Q86XT4 487 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 TNPO1Q92973 898 aaKnown RBP19.52■□□□□ 0.72
VPS29-204ENST00000548259 PBXIP1Q96AQ6 731 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 CDHR1Q96JP9 859 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 PIGSQ96S52 555 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 OSBPL7Q9BZF2 842 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 RIOX1Q9H6W3 641 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 RTEL1Q9NZ71 1219 aa19.52■□□□□ 0.72
VPS29-204ENST00000548259 ENPP3O14638 875 aa19.51■□□□□ 0.71
VPS29-204ENST00000548259 TBX10O75333 385 aa19.51■□□□□ 0.71
VPS29-204ENST00000548259 CSPG5O95196 566 aa19.51■□□□□ 0.71
VPS29-204ENST00000548259 MRPS9P82933 396 aaKnown RBP19.51■□□□□ 0.71
VPS29-204ENST00000548259 PPFIA1Q13136 1202 aa19.51■□□□□ 0.71
VPS29-204ENST00000548259 SART3Q15020 963 aaKnown RBP19.51■□□□□ 0.71
VPS29-204ENST00000548259 TRIM67Q6ZTA4 783 aa19.51■□□□□ 0.71
VPS29-204ENST00000548259 FTHL17Q9BXU8 183 aa19.51■□□□□ 0.71
VPS29-204ENST00000548259 EHMT1Q9H9B1 1298 aa19.51■□□□□ 0.71
VPS29-204ENST00000548259 ERAP1Q9NZ08 941 aa19.51■□□□□ 0.71
VPS29-204ENST00000548259 PLAGL2Q9UPG8 496 aa19.51■□□□□ 0.71
VPS29-204ENST00000548259 FRMPD4Q14CM0 1322 aa19.51■□□□□ 0.71
VPS29-204ENST00000548259 FSD2A1L4K1 749 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 TMEM221A6NGB7 291 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 M0QZ92 97 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 M0R296 226 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 EYA4O95677 639 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 STAG3L1P0CL83 205 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 LPIN1Q14693 890 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 GRM4Q14833 912 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 SEC23AQ15436 765 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 PCNX4Q63HM2 1172 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 TSHZ1Q6ZSZ6 1077 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 CMTR2Q8IYT2 770 aaKnown RBP19.5■□□□□ 0.71
VPS29-204ENST00000548259 SMARCC2Q8TAQ2 1214 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 ZNF689Q96CS4 500 aaPredicted RBP19.5■□□□□ 0.71
VPS29-204ENST00000548259 IRF2BPLQ9H1B7 796 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 BCAS3Q9H6U6 928 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 ALG13Q9NP73 1137 aaKnown RBP19.5■□□□□ 0.71
VPS29-204ENST00000548259 TUBE1Q9UJT0 475 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 MYH7BA7E2Y1 1941 aa19.5■□□□□ 0.71
VPS29-204ENST00000548259 ST18O60284 1047 aa19.49■□□□□ 0.71
VPS29-204ENST00000548259 DGKIO75912 1065 aa19.49■□□□□ 0.71
VPS29-204ENST00000548259 TCF7P36402 384 aaPredicted RBP19.49■□□□□ 0.71
VPS29-204ENST00000548259 IER5Q5VY09 327 aa19.49■□□□□ 0.71
VPS29-204ENST00000548259 EFHBQ8N7U6 833 aa19.49■□□□□ 0.71
VPS29-204ENST00000548259 GLG1Q92896 1179 aa19.49■□□□□ 0.71
VPS29-204ENST00000548259 RC3H2Q9HBD1 1191 aaKnown RBP19.49■□□□□ 0.71
VPS29-204ENST00000548259 RNF216Q9NWF9 866 aaPredicted RBP19.49■□□□□ 0.71
VPS29-204ENST00000548259 RALGAPA2Q2PPJ7 1873 aa19.48■□□□□ 0.71
VPS29-204ENST00000548259 IFIT3O14879 490 aaKnown RBP19.48■□□□□ 0.71
VPS29-204ENST00000548259 LINC00271P0C7V0 271 aa19.48■□□□□ 0.71
VPS29-204ENST00000548259 GRIK4Q16099 956 aa19.48■□□□□ 0.71
VPS29-204ENST00000548259 FBXO47Q5MNV8 452 aa19.48■□□□□ 0.71
VPS29-204ENST00000548259 FAM43BQ6ZT52 329 aaPredicted RBP19.48■□□□□ 0.71
VPS29-204ENST00000548259 NPAS4Q8IUM7 802 aa19.48■□□□□ 0.71
VPS29-204ENST00000548259 SEPT1Q8WYJ6 367 aa19.48■□□□□ 0.71
VPS29-204ENST00000548259 SNX27Q96L92 541 aa19.48■□□□□ 0.71
VPS29-204ENST00000548259 OSBPL3Q9H4L5 887 aa19.48■□□□□ 0.71
VPS29-204ENST00000548259 SQORQ9Y6N5 450 aa19.48■□□□□ 0.71
VPS29-204ENST00000548259 WDFY4Q6ZS81 3184 aa19.48■□□□□ 0.71
VPS29-204ENST00000548259 RRN3P2A6NIE6 340 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 LINC01565O15544 149 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 GTF2F1P35269 517 aaKnown RBP eCLIP19.47■□□□□ 0.71
VPS29-204ENST00000548259 MGAT3Q09327 533 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 COASYQ13057 564 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 SEMA3FQ13275 785 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 AAMPQ13685 434 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 RUFY4Q6ZNE9 571 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 CATIPQ7Z7H3 387 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 RALYLQ86SE5 291 aaKnown RBP19.47■□□□□ 0.71
VPS29-204ENST00000548259 SMRP1Q8NCR6 262 aa19.47■□□□□ 0.71
VPS29-204ENST00000548259 DNAJB3Q8WWF6 145 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms