RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 BAIAP2L1Q9UHR4 511 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 CCDC194A0A1B0GVG4 234 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 TACC1O75410 805 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 KIF4AO95239 1232 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 CLNS1AP54105 237 aaKnown RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 PTPN12Q05209 780 aaKnown RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 CKAP4Q07065 602 aaKnown RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 WTAPQ15007 396 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 KIF6Q6ZMV9 814 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 BRAPQ7Z569 592 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 CNGA4Q8IV77 575 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 ACRBPQ8NEB7 543 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 TTC16Q8NEE8 873 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 CTCFLQ8NI51 663 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 SELENOSQ9BQE4 189 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 SUGCTQ9HAC7 445 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 SAMSN1Q9NSI8 373 aaKnown RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 TGFBR3LH3BV60 316 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 PRDM1O75626 825 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 STARD3NLO95772 234 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 MMP10P09238 476 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 STAT6P42226 847 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 TBC1D8BQ0IIM8 1120 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 TNNI3KQ59H18 835 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 MSL1Q68DK7 614 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 NCAPH2Q6IBW4 605 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 KANK3Q6NY19 840 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 BICDL1Q6ZP65 573 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 TTLL7Q6ZT98 887 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 NOP9Q86U38 636 aaKnown RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 RABGGTAQ92696 567 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 CTAGE1Q96RT6 745 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 PAIP2Q9BPZ3 127 aaKnown RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 RTFDC1Q9BY42 306 aaPredicted RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 MYO6Q9UM54 1294 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 TMA7Q9Y2S6 64 aaKnown RBP6.08□□□□□ -1.44
LIMA1-203ENST00000547825 FPGT-TNNI3KV9GXZ4 949 aa6.08□□□□□ -1.44
LIMA1-203ENST00000547825 BTBD18B2RXH4 712 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 EIF3CLB5ME19 914 aaKnown RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 UBE2Q2LH0YL09 131 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 RNF113AO15541 343 aaKnown RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 TAF5LO75529 589 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 SRGNP10124 158 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 PCSK2P16519 638 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 ATP4AP20648 1035 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 SSR1P43307 286 aaKnown RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 BRD3Q15059 726 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 POSTNQ15063 836 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 CCDC40Q4G0X9 1142 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 SOGA3Q5TF21 947 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 ICE2Q659A1 982 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 E4F1Q66K89 784 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 STYK1Q6J9G0 422 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 NAA16Q6N069 864 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 CC2D1AQ6P1N0 951 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 WDR24Q96S15 920 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 EIF3CQ99613 913 aaKnown RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 FEZ2Q9UHY8 353 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 AKAP2Q9Y2D5 859 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 GSTTP1A0A1W2PQM5 241 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 E7EVH7 732 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 ALDH1L1O75891 902 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 CASP14P31944 242 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 CXCR5P32302 372 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 MAP3K12Q12852 859 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 SEPT7Q16181 437 aaKnown RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 EGFLAMQ63HQ2 1017 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 ERMP1Q7Z2K6 904 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 KLHL7Q8IXQ5 586 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 GSPT2Q8IYD1 628 aaKnown RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 ENGASEQ8NFI3 743 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 PLA2G12BQ9BX93 195 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 NAA15Q9BXJ9 866 aaKnown RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 ELP3Q9H9T3 547 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 CDHR2Q9BYE9 1310 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 TIMP2P16035 220 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 CASP1P29466 404 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 ASIC1P78348 528 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 MTF1Q14872 753 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 SDE2Q6IQ49 451 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 ARMCX5Q6P1M9 558 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 LRRC69Q6ZNQ3 347 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 TOGARAM2Q6ZUX3 1019 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 SRGAP1Q7Z6B7 1085 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 IQCA1Q86XH1 822 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 NSUN7Q8NE18 718 aaKnown RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 UBLCP1Q8WVY7 318 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 CTNNBL1Q8WYA6 563 aaPredicted RBP6.07□□□□□ -1.44
LIMA1-203ENST00000547825 CABS1Q96KC9 395 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 BRIP1Q9BX63 1249 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 ZFYVE28Q9HCC9 887 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 RCOR1Q9UKL0 485 aa6.07□□□□□ -1.44
LIMA1-203ENST00000547825 A0A0U1RQJ8 604 aa6.06□□□□□ -1.44
LIMA1-203ENST00000547825 FDPSP14324 419 aaKnown RBP6.06□□□□□ -1.44
LIMA1-203ENST00000547825 PDIA3P30101 505 aaKnown RBP6.06□□□□□ -1.44
LIMA1-203ENST00000547825 CYP2C19P33261 490 aa6.06□□□□□ -1.44
LIMA1-203ENST00000547825 CTSOP43234 321 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-203ENST00000547825 RFX5P48382 616 aaPredicted RBP6.06□□□□□ -1.44
LIMA1-203ENST00000547825 KRT83P78385 493 aa6.06□□□□□ -1.44
LIMA1-203ENST00000547825 GRM2Q14416 872 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms