RNA–Protein interactions for RNA: ENST00000475639.5

U2AF1-209, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 1 (best)

Gene U2AF1, Length 4,694 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-209ENST00000475639 ZNF572Q7Z3I7 529 aaPredicted RBP12.45□□□□□ -0.42
U2AF1-209ENST00000475639 SEC16BQ96JE7 1060 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 IWS1Q96ST2 819 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 IFIH1Q9BYX4 1025 aaKnown RBP12.45□□□□□ -0.42
U2AF1-209ENST00000475639 YIPF3Q9GZM5 350 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 CHD1O14646 1710 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 USP31Q70CQ4 1352 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 TTC26A0AVF1 554 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 GMNCA6NCL1 334 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 PROSER3Q2NL68 480 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 LRRC8CQ8TDW0 803 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 GRK7Q8WTQ7 553 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 MIS12Q9H081 205 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 SNX12Q9UMY4 172 aa12.45□□□□□ -0.42
U2AF1-209ENST00000475639 LRRC10BA6NIK2 292 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 PPP1R3GB7ZBB8 358 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 POLR2BP30876 1174 aaKnown RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 MAP3K7CLP57077 242 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 GLE1Q53GS7 698 aaKnown RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 HIBCHQ6NVY1 386 aaPredicted RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 SCYL3Q8IZE3 742 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 EHD2Q9NZN4 543 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 NUB1Q9Y5A7 615 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 SH2B2O14492 632 aaPredicted RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 DEXIO95424 95 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 LMNB1P20700 586 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 TNFRSF8P28908 595 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 TFCP2Q12800 502 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 PSMD2Q13200 908 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 KRT80Q6KB66 452 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 ZNF662Q6ZS27 426 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 TRIM58Q8NG06 486 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 ANLNQ9NQW6 1124 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 TAB2Q9NYJ8 693 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 LRWD1Q9UFC0 647 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 LIMA1Q9UHB6 759 aaKnown RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 DNM3Q9UQ16 869 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 RPS6KL1Q9Y6S9 549 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 TRAPPC3O43617 180 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 OATP04181 439 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 ANTXR2P58335 489 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 NONOQ15233 471 aaKnown RBP eCLIP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 TRIM50Q86XT4 487 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 CD302Q8IX05 232 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 FNBP4Q8N3X1 1017 aaPredicted RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 PAWRQ96IZ0 340 aaKnown RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 UTYO14607 1347 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 KRT19P08727 400 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 PTPREP23469 700 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 ADCY8P40145 1251 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 LRRC23Q53EV4 343 aaPredicted RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 CRELD2Q6UXH1 353 aaPredicted RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 BBOF1Q8ND07 529 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 PHKBQ93100 1093 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 ABTB1Q969K4 478 aaPredicted RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 EYA3Q99504 573 aa12.44□□□□□ -0.42
U2AF1-209ENST00000475639 CORO1CQ9ULV4 474 aaPredicted RBP12.44□□□□□ -0.42
U2AF1-209ENST00000475639 HNRNPCL2B2RXH8 293 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 CHMP2AO43633 222 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 HNRNPCL1O60812 293 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 LDHBP07195 334 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 TCP1P17987 556 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 EEF1DP29692 281 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 LONP1P36776 959 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 GARSP41250 739 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 CARSP49589 748 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 TOB1P50616 345 aaPredicted RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 COPB1P53618 953 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 KSR2Q6VAB6 950 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 COPS6Q7L5N1 327 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 RUNDC3BQ96NL0 473 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 PURBQ96QR8 312 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 AZI2Q9H6S1 392 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 FLT4P35916 1363 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 MAST3O60307 1309 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 WDR17Q8IZU2 1322 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 UBE2Q2LH0YL09 131 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 TXKP42681 527 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 TPTE2Q6XPS3 522 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 C4orf50Q6ZRC1 276 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 NFU1Q9UMS0 254 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 PDE1BQ01064 536 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 ZMYM1Q5SVZ6 1142 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 RBM26Q5T8P6 1007 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 TRIM42Q8IWZ5 723 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 MB21D2Q8IYB1 491 aaPredicted RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 LINS1Q8NG48 757 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 SNX29Q8TEQ0 813 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 XAGE3Q8WTP9 111 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 DNAJC7Q99615 494 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 TRIM56Q9BRZ2 755 aaKnown RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 SLC12A6Q9UHW9 1150 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 CD2APQ9Y5K6 639 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 ZSCAN5CA6NGD5 496 aaPredicted RBP12.43□□□□□ -0.42
U2AF1-209ENST00000475639 CAPN9O14815 690 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 PPIP5K2O43314 1243 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 THAP12O43422 761 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 HOXB7P09629 217 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 LINGO3P0C6S8 592 aa12.43□□□□□ -0.42
U2AF1-209ENST00000475639 SKIP12755 728 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 79.7 ms