RNA–Protein interactions for RNA: ENST00000409769.6

CLK1-203, Transcript of CDC like kinase 1, humanhuman

TSL 2 BASIC

Gene CLK1, Length 1,192 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-203ENST00000409769 PKN3Q6P5Z2 889 aa6.5□□□□□ -1.37
CLK1-203ENST00000409769 TEPPQ6URK8 271 aa6.5□□□□□ -1.37
CLK1-203ENST00000409769 SPATC1Q76KD6 591 aa6.5□□□□□ -1.37
CLK1-203ENST00000409769 TTLL11Q8NHH1 800 aa6.5□□□□□ -1.37
CLK1-203ENST00000409769 KISS1RQ969F8 398 aaPredicted RBP6.5□□□□□ -1.37
CLK1-203ENST00000409769 CLDND1Q9NY35 253 aa6.5□□□□□ -1.37
CLK1-203ENST00000409769 MYOTQ9UBF9 498 aa6.5□□□□□ -1.37
CLK1-203ENST00000409769 FTSJ1Q9UET6 329 aa6.5□□□□□ -1.37
CLK1-203ENST00000409769 SRRDQ9UH36 339 aa6.5□□□□□ -1.37
CLK1-203ENST00000409769 NPFFR2Q9Y5X5 522 aa6.5□□□□□ -1.37
CLK1-203ENST00000409769 TARBP1Q13395 1621 aaKnown RBP6.5□□□□□ -1.37
CLK1-203ENST00000409769 B4GALT3O60512 393 aa6.49□□□□□ -1.37
CLK1-203ENST00000409769 KLHL36Q8N4N3 616 aa6.49□□□□□ -1.37
CLK1-203ENST00000409769 ARRDC4Q8NCT1 418 aa6.49□□□□□ -1.37
CLK1-203ENST00000409769 PMFBP1Q8TBY8 1022 aa6.49□□□□□ -1.37
CLK1-203ENST00000409769 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.49□□□□□ -1.37
CLK1-203ENST00000409769 KCTD13Q8WZ19 329 aa6.49□□□□□ -1.37
CLK1-203ENST00000409769 BARX1Q9HBU1 254 aaPredicted RBP6.49□□□□□ -1.37
CLK1-203ENST00000409769 TSC22D4Q9Y3Q8 395 aa6.49□□□□□ -1.37
CLK1-203ENST00000409769 NUB1Q9Y5A7 615 aa6.49□□□□□ -1.37
CLK1-203ENST00000409769 ABCA10Q8WWZ4 1543 aa6.49□□□□□ -1.37
CLK1-203ENST00000409769 RAD54L2Q9Y4B4 1467 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 TRAV20A0A0B4J274 112 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 NPEPPSL1A6NEC2 478 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 ARNTLO00327 626 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 DLX3O60479 287 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 CHGBP05060 677 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 GRIA2P42262 883 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 EPHB4P54760 987 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 SSRP1Q08945 709 aaKnown RBP6.48□□□□□ -1.37
CLK1-203ENST00000409769 IFRD2Q12894 506 aaPredicted RBP6.48□□□□□ -1.37
CLK1-203ENST00000409769 DENND5AQ6IQ26 1287 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 RSPO2Q6UXX9 243 aaPredicted RBP6.48□□□□□ -1.37
CLK1-203ENST00000409769 ARHGEF18Q6ZSZ5 1173 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 ZBTB38Q8NAP3 1195 aaPredicted RBP6.48□□□□□ -1.37
CLK1-203ENST00000409769 TMEM145Q8NBT3 493 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 OSBP2Q969R2 916 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 MBD6Q96DN6 1003 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 SRPK1Q96SB4 655 aaKnown RBP6.48□□□□□ -1.37
CLK1-203ENST00000409769 SEMA4AQ9H3S1 761 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 GPR27Q9NS67 375 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 FBXL7Q9UJT9 491 aa6.48□□□□□ -1.37
CLK1-203ENST00000409769 RUSC2Q8N2Y8 1516 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 LRG1P02750 347 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 PABPC1P11940 636 aaKnown RBP6.47□□□□□ -1.37
CLK1-203ENST00000409769 PPP2CBP62714 309 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 PPP2CAP67775 309 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 SF1Q15637 639 aaKnown RBP6.47□□□□□ -1.37
CLK1-203ENST00000409769 PRSS53Q2L4Q9 553 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 CIR1Q86X95 450 aaPredicted RBP6.47□□□□□ -1.37
CLK1-203ENST00000409769 ZSWIM3Q96MP5 696 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 IER2Q9BTL4 223 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 PPP4R1LQ9P1A2 415 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 CROTQ9UKG9 612 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 CDK11AQ9UQ88 783 aaPredicted RBP6.47□□□□□ -1.37
CLK1-203ENST00000409769 SOGA1O94964 1423 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 IFT140Q96RY7 1462 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 ABCA5Q8WWZ7 1642 aa6.47□□□□□ -1.37
CLK1-203ENST00000409769 AKAP8O43823 692 aaKnown RBP6.46□□□□□ -1.38
CLK1-203ENST00000409769 DIAPH1O60610 1272 aaKnown RBP6.46□□□□□ -1.38
CLK1-203ENST00000409769 MLLT6P55198 1093 aaPredicted RBP6.46□□□□□ -1.38
CLK1-203ENST00000409769 SLFN13Q68D06 897 aa6.46□□□□□ -1.38
CLK1-203ENST00000409769 LIMS2Q7Z4I7 341 aa6.46□□□□□ -1.38
CLK1-203ENST00000409769 SCUBE1Q8IWY4 988 aa6.46□□□□□ -1.38
CLK1-203ENST00000409769 SLC6A20Q9NP91 592 aa6.46□□□□□ -1.38
CLK1-203ENST00000409769 DLL4Q9NR61 685 aa6.46□□□□□ -1.38
CLK1-203ENST00000409769 ASH2LQ9UBL3 628 aa6.46□□□□□ -1.38
CLK1-203ENST00000409769 EEA1Q15075 1411 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 CCDC85CA6NKD9 419 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 PRODHO43272 600 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 LCP1P13796 627 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 NFATC3Q12968 1075 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 NSMFQ6X4W1 530 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 KBTBD2Q8IY47 623 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 ZCCHC14Q8WYQ9 949 aaKnown RBP6.45□□□□□ -1.38
CLK1-203ENST00000409769 DNAJC7Q99615 494 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 ZFYVE21Q9BQ24 234 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 PDGFDQ9GZP0 370 aaPredicted RBP6.45□□□□□ -1.38
CLK1-203ENST00000409769 ST6GALNAC2Q9UJ37 374 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 KDM2BQ8NHM5 1336 aa6.45□□□□□ -1.38
CLK1-203ENST00000409769 KIF27Q86VH2 1401 aa6.44□□□□□ -1.38
CLK1-203ENST00000409769 CCDC163A0A0D9SF12 145 aa6.44□□□□□ -1.38
CLK1-203ENST00000409769 CCDC144BQ3MJ40 725 aa6.44□□□□□ -1.38
CLK1-203ENST00000409769 VASNQ6EMK4 673 aa6.44□□□□□ -1.38
CLK1-203ENST00000409769 TRMT10BQ6PF06 316 aaKnown RBP6.44□□□□□ -1.38
CLK1-203ENST00000409769 DPH6Q7L8W6 267 aa6.44□□□□□ -1.38
CLK1-203ENST00000409769 DNERQ8NFT8 737 aa6.44□□□□□ -1.38
CLK1-203ENST00000409769 THAP3Q8WTV1 239 aaPredicted RBP6.44□□□□□ -1.38
CLK1-203ENST00000409769 DCAF4Q8WV16 495 aa6.44□□□□□ -1.38
CLK1-203ENST00000409769 JADE2Q9NQC1 790 aa6.44□□□□□ -1.38
CLK1-203ENST00000409769 PFDN2Q9UHV9 154 aa6.44□□□□□ -1.38
CLK1-203ENST00000409769 ADAM29Q9UKF5 820 aa6.44□□□□□ -1.38
CLK1-203ENST00000409769 FAM153BP0C7A2 387 aa6.43□□□□□ -1.38
CLK1-203ENST00000409769 GDF5P43026 501 aa6.43□□□□□ -1.38
CLK1-203ENST00000409769 C2orf27AQ580R0 203 aa6.43□□□□□ -1.38
CLK1-203ENST00000409769 STYK1Q6J9G0 422 aa6.43□□□□□ -1.38
CLK1-203ENST00000409769 IGDCC4Q8TDY8 1250 aa6.43□□□□□ -1.38
CLK1-203ENST00000409769 SH3RF3Q8TEJ3 882 aaPredicted RBP6.43□□□□□ -1.38
CLK1-203ENST00000409769 MRFAP1L1Q96HT8 127 aa6.43□□□□□ -1.38
CLK1-203ENST00000409769 KLC2Q9H0B6 622 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms