RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 C2orf69Q8N8R5 385 aa20.22■□□□□ 0.83
VIM-201ENST00000224237 KIAA0895Q8NCT3 520 aa20.22■□□□□ 0.83
VIM-201ENST00000224237 PKD2L1Q9P0L9 805 aa20.22■□□□□ 0.83
VIM-201ENST00000224237 ZKSCAN5Q9Y2L8 839 aa20.22■□□□□ 0.83
VIM-201ENST00000224237 LCTP09848 1927 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 EYA4O95677 639 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 SLC25A27O95847 323 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 ITGBL1O95965 494 aaPredicted RBP20.21■□□□□ 0.83
VIM-201ENST00000224237 ITGB3BPQ13352 177 aaPredicted RBP20.21■□□□□ 0.83
VIM-201ENST00000224237 CTTNQ14247 550 aaKnown RBP20.21■□□□□ 0.83
VIM-201ENST00000224237 HSP90AA4PQ58FG1 418 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 CDKAL1Q5VV42 579 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 NCAPG2Q86XI2 1143 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 TPH2Q8IWU9 490 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 CCDC65Q8IXS2 484 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 INPP4AQ96PE3 977 aaPredicted RBP20.21■□□□□ 0.83
VIM-201ENST00000224237 IWS1Q96ST2 819 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 TXNRD2Q9NNW7 524 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 PNMA3Q9UL41 463 aa20.21■□□□□ 0.83
VIM-201ENST00000224237 DDX39AO00148 427 aaKnown RBP20.2■□□□□ 0.82
VIM-201ENST00000224237 MSNP26038 577 aaKnown RBP20.2■□□□□ 0.82
VIM-201ENST00000224237 MIER3Q7Z3K6 550 aa20.2■□□□□ 0.82
VIM-201ENST00000224237 CDHR1Q96JP9 859 aa20.2■□□□□ 0.82
VIM-201ENST00000224237 MS4A4AQ96JQ5 239 aa20.2■□□□□ 0.82
VIM-201ENST00000224237 PANK4Q9NVE7 773 aa20.2■□□□□ 0.82
VIM-201ENST00000224237 BICDL2A1A5D9 508 aa20.2■□□□□ 0.82
VIM-201ENST00000224237 KRT18P05783 430 aaKnown RBP20.2■□□□□ 0.82
VIM-201ENST00000224237 COASYQ13057 564 aa20.2■□□□□ 0.82
VIM-201ENST00000224237 GTF3C2Q8WUA4 911 aaPredicted RBP20.2■□□□□ 0.82
VIM-201ENST00000224237 MOV10L1Q9BXT6 1211 aaKnown RBP20.2■□□□□ 0.82
VIM-201ENST00000224237 BHMT2Q9H2M3 363 aa20.2■□□□□ 0.82
VIM-201ENST00000224237 SLC39A2Q9NP94 309 aa20.2■□□□□ 0.82
VIM-201ENST00000224237 TCEAL9Q9UHQ7 104 aa20.2■□□□□ 0.82
VIM-201ENST00000224237 LOXHD1Q8IVV2 1947 aa20.2■□□□□ 0.82
VIM-201ENST00000224237 FRMD3A2A2Y4 597 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 CYP2C8P10632 490 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 CCNE1P24864 410 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 ARSHQ5FYA8 562 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 CHADLQ6NUI6 762 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 CCDC186Q7Z3E2 898 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 NACC1Q96RE7 527 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 CTAGE1Q96RT6 745 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 LXNQ9BS40 222 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 IMPACTQ9P2X3 320 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 RBPJLQ9UBG7 517 aa20.19■□□□□ 0.82
VIM-201ENST00000224237 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.19■□□□□ 0.825e-10■■□□□ 11.7
VIM-201ENST00000224237 CETPP11597 493 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 GTF2A2P52657 109 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 SPAG1Q07617 926 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 GNPTABQ3T906 1256 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.18■□□□□ 0.82
VIM-201ENST00000224237 GUF1Q8N442 669 aaKnown RBP20.18■□□□□ 0.82
VIM-201ENST00000224237 P2RX5Q93086 422 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 HPS3Q969F9 1004 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 CCL15-CCL14A0A0B4J2E2 113 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 TRIM49BA6NDI0 452 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 P4HBP07237 508 aaKnown RBP20.18■□□□□ 0.82
VIM-201ENST00000224237 ERCC3P19447 782 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 PTGS1P23219 599 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 KRT76Q01546 638 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 CCL15Q16663 113 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 FAM26FQ5R3K3 315 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 TTI2Q6NXR4 508 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 BRI3BPQ8WY22 251 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 TRIM47Q96LD4 638 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 NAP1L5Q96NT1 182 aaPredicted RBP20.18■□□□□ 0.82
VIM-201ENST00000224237 ADD3Q9UEY8 706 aaKnown RBP20.18■□□□□ 0.82
VIM-201ENST00000224237 NRBP1Q9UHY1 535 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 SLC45A1Q9Y2W3 748 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 SAMM50Q9Y512 469 aa20.18■□□□□ 0.82
VIM-201ENST00000224237 ATP9AO75110 1047 aa20.17■□□□□ 0.82
VIM-201ENST00000224237 COBLO75128 1261 aa20.17■□□□□ 0.82
VIM-201ENST00000224237 SFNP31947 248 aa20.17■□□□□ 0.82
VIM-201ENST00000224237 JAK3P52333 1124 aa20.17■□□□□ 0.82
VIM-201ENST00000224237 PMS1P54277 932 aaKnown RBP20.17■□□□□ 0.82
VIM-201ENST00000224237 CNTN2Q02246 1040 aa20.17■□□□□ 0.82
VIM-201ENST00000224237 STXBP2Q15833 593 aa20.17■□□□□ 0.82
VIM-201ENST00000224237 Q3C1V9 767 aa20.17■□□□□ 0.82
VIM-201ENST00000224237 CCDC144BQ3MJ40 725 aa20.17■□□□□ 0.82
VIM-201ENST00000224237 PIGOQ8TEQ8 1089 aa20.17■□□□□ 0.82
VIM-201ENST00000224237 EIF2AK3Q9NZJ5 1116 aaKnown RBP20.17■□□□□ 0.82
VIM-201ENST00000224237 ASTN1O14525 1302 aa20.17■□□□□ 0.82
VIM-201ENST00000224237 KIAA1217Q5T5P2 1943 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 BTBD19C9JJ37 291 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 POTEB2H3BUK9 544 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 ALDH5A1P51649 535 aaPredicted RBP20.16■□□□□ 0.82
VIM-201ENST00000224237 GIT2Q14161 759 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 SPRYD7Q5W111 196 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 FILIP1Q7Z7B0 1213 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 BANK1Q8NDB2 785 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 ANKRD20A12PQ8NF67 263 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 RDM1Q8NG50 284 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 NOC3LQ8WTT2 800 aaKnown RBP20.16■□□□□ 0.82
VIM-201ENST00000224237 ZSWIM4Q9H7M6 989 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 KCND2Q9NZV8 630 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 WRAP73Q9P2S5 460 aaPredicted RBP20.16■□□□□ 0.82
VIM-201ENST00000224237 TRPM7Q96QT4 1865 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 NPHP3-ACAD11A0A0J9YXS1 232 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 A0A1B0GTH6 734 aa20.16■□□□□ 0.82
VIM-201ENST00000224237 WDR64B1ANS9 1081 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms