RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 MXRA8Q9BRK3 442 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 SH3GLB2Q9NR46 395 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 TMEM260Q9NX78 707 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 NOD1Q9Y239 953 aa18.52■□□□□ 0.56
TRIM28-206ENST00000595974 PPFIA3O75145 1194 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 CDKL5O76039 1030 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 DEXIO95424 95 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 LGALS2P05162 132 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 CYP2C9P11712 490 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 CSF2RAP15509 400 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 KCNA2P16389 499 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 EPHB4P54760 987 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 AK2P54819 239 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 ARHGAP4P98171 946 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 GPR153Q6NV75 609 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 FAM177A1Q8N128 213 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-206ENST00000595974 C7orf31Q8N865 590 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 PPP1R13LQ8WUF5 828 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 GPR20Q99678 358 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 C16orf70Q9BSU1 422 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 SLKQ9H2G2 1235 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-206ENST00000595974 BCAS3Q9H6U6 928 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 VPS54Q9P1Q0 977 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 GTF2IRD1Q9UHL9 959 aa18.51■□□□□ 0.55
TRIM28-206ENST00000595974 UMODL1Q5DID0 1318 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 PITPNM1O00562 1244 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 SCRN1Q12765 414 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 PTGISQ16647 500 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 C8orf34Q49A92 452 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 CEP55Q53EZ4 464 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 JAKMIP3Q5VZ66 844 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 PSRC1Q6PGN9 363 aaPredicted RBP18.5■□□□□ 0.55
TRIM28-206ENST00000595974 LRCH3Q96II8 777 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 RNPC3Q96LT9 517 aaKnown RBP18.5■□□□□ 0.55
TRIM28-206ENST00000595974 ALG1Q9BT22 464 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 WNT8AQ9H1J5 351 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 HDAC6Q9UBN7 1215 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 TPCN1Q9ULQ1 816 aa18.5■□□□□ 0.55
TRIM28-206ENST00000595974 H3BRB1 525 aa18.49■□□□□ 0.55
TRIM28-206ENST00000595974 PFKFB2O60825 505 aa18.49■□□□□ 0.55
TRIM28-206ENST00000595974 ATP9AO75110 1047 aa18.49■□□□□ 0.55
TRIM28-206ENST00000595974 BFSP2Q13515 415 aa18.49■□□□□ 0.55
TRIM28-206ENST00000595974 GDF6Q6KF10 455 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-206ENST00000595974 NIPA1Q7RTP0 329 aa18.49■□□□□ 0.55
TRIM28-206ENST00000595974 CCDC155Q8N6L0 562 aa18.49■□□□□ 0.55
TRIM28-206ENST00000595974 CRYGNQ8WXF5 182 aa18.49■□□□□ 0.55
TRIM28-206ENST00000595974 TUT1Q9H6E5 874 aaKnown RBP18.49■□□□□ 0.55
TRIM28-206ENST00000595974 IL23AQ9NPF7 189 aa18.49■□□□□ 0.55
TRIM28-206ENST00000595974 KCNH7Q9NS40 1196 aa18.49■□□□□ 0.55
TRIM28-206ENST00000595974 ZNF215Q9UL58 517 aaPredicted RBP18.49■□□□□ 0.55
TRIM28-206ENST00000595974 STK36Q9NRP7 1315 aa18.49■□□□□ 0.55
TRIM28-206ENST00000595974 CYP3A4P08684 503 aa18.48■□□□□ 0.55
TRIM28-206ENST00000595974 CCL23P55773 120 aa18.48■□□□□ 0.55
TRIM28-206ENST00000595974 SP4Q02446 784 aa18.48■□□□□ 0.55
TRIM28-206ENST00000595974 CAGE1Q8TC20 777 aa18.48■□□□□ 0.55
TRIM28-206ENST00000595974 BUD13Q9BRD0 619 aaKnown RBP eCLIP18.48■□□□□ 0.553e-11■□□□□ 9
TRIM28-206ENST00000595974 NFASCO94856 1347 aa18.48■□□□□ 0.55
TRIM28-206ENST00000595974 TET1Q8NFU7 2136 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 MEIS1O00470 390 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 ZNF76P36508 570 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 NEK4P51957 841 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 NLRP5P59047 1200 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 RBL2Q08999 1139 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 TMEM240Q5SV17 173 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 CYP2W1Q8TAV3 490 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 CTAGE1Q96RT6 745 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 JPH1Q9HDC5 661 aaPredicted RBP18.47■□□□□ 0.55
TRIM28-206ENST00000595974 PKD2L1Q9P0L9 805 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 WDR81Q562E7 1941 aa18.47■□□□□ 0.55
TRIM28-206ENST00000595974 MYH9P35579 1960 aaKnown RBP18.46■□□□□ 0.55
TRIM28-206ENST00000595974 ADAMTS3O15072 1205 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 PFKMP08237 780 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 HOXC8P31273 242 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 RFC2P35250 354 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 TCF7P36402 384 aaPredicted RBP18.46■□□□□ 0.55
TRIM28-206ENST00000595974 SETQ01105 290 aaPredicted RBP18.46■□□□□ 0.55
TRIM28-206ENST00000595974 C16orf59Q7L2K0 433 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 TRIM50Q86XT4 487 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 RPUSD2Q8IZ73 545 aaKnown RBP18.46■□□□□ 0.55
TRIM28-206ENST00000595974 RETREG2Q8NC44 543 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 RASGRP4Q8TDF6 673 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 AFAP1L1Q8TED9 768 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 SEPT1Q8WYJ6 367 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 SCLYQ96I15 445 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 SDF4Q9BRK5 362 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 SLC9A2Q9UBY0 812 aa18.46■□□□□ 0.55
TRIM28-206ENST00000595974 SMIM10L2AP0DMW4 78 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 SMIM10L2BP0DMW5 78 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 ARP10275 920 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 ACRP10323 421 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 PTK7Q13308 1070 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 UTP14CQ5TAP6 766 aaKnown RBP18.45■□□□□ 0.54
TRIM28-206ENST00000595974 GALNT17Q6IS24 598 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 ZNF365Q70YC5 407 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 PLA2G4DQ86XP0 818 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 DAGLBQ8NCG7 672 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 GTF3C6Q969F1 213 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 C22orf23Q9BZE7 217 aa18.45■□□□□ 0.54
TRIM28-206ENST00000595974 MTIF3Q9H2K0 278 aaKnown RBP18.45■□□□□ 0.54
TRIM28-206ENST00000595974 AGO4Q9HCK5 861 aaKnown RBP18.45■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms