RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 INPP4AQ96PE3 977 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-203ENST00000594298 TGS1Q96RS0 853 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-203ENST00000594298 MTA3Q9BTC8 594 aa20.25■□□□□ 0.83
SHKBP1-203ENST00000594298 TUT1Q9H6E5 874 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-203ENST00000594298 SUGCTQ9HAC7 445 aa20.25■□□□□ 0.83
SHKBP1-203ENST00000594298 SENP2Q9HC62 589 aa20.25■□□□□ 0.83
SHKBP1-203ENST00000594298 REV3LO60673 3130 aa20.25■□□□□ 0.83
SHKBP1-203ENST00000594298 PTPRSQ13332 1948 aa20.25■□□□□ 0.83
SHKBP1-203ENST00000594298 PRRC2BQ5JSZ5 2229 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-203ENST00000594298 MYH6P13533 1939 aa20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 C17orf102A2RUQ5 167 aa20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 LINC01553A4QN01 128 aa20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 RSPH10B2B2RC85 870 aa20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 CAND2O75155 1236 aa20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 LGALS2P05162 132 aa20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 RSPH10BP0C881 870 aa20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 THPOP40225 353 aa20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 MRPS9P82933 396 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 GDPD5Q8WTR4 605 aa20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 INSL6Q9Y581 213 aa20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 TRIP12Q14669 1992 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-203ENST00000594298 SPATA31C2B4DYI2 1134 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 SMIM10L2AP0DMW4 78 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 SMIM10L2BP0DMW5 78 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 MCM5P33992 734 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 NEDD9Q14511 834 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 KRT32Q14532 448 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 PLEKHG4Q58EX7 1191 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 METTL7BQ6UX53 244 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 LIN28BQ6ZN17 250 aaKnown RBP eCLIP20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 CATIPQ7Z7H3 387 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 DBF4BQ8NFT6 615 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 ATP6V0A1Q93050 837 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 ZFP91Q96JP5 570 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 MAP3K14Q99558 947 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 C1QTNF1Q9BXJ1 281 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 USP26Q9BXU7 913 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 TAF6LQ9Y6J9 622 aa20.23■□□□□ 0.83
SHKBP1-203ENST00000594298 NOP56O00567 594 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-203ENST00000594298 EPB41L2O43491 1005 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-203ENST00000594298 AMHP03971 560 aa20.22■□□□□ 0.83
SHKBP1-203ENST00000594298 HTRA4P83105 476 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-203ENST00000594298 MB21D2Q8IYB1 491 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-203ENST00000594298 TMTC2Q8N394 836 aa20.22■□□□□ 0.83
SHKBP1-203ENST00000594298 IGDCC4Q8TDY8 1250 aa20.22■□□□□ 0.83
SHKBP1-203ENST00000594298 BCAS3Q9H6U6 928 aa20.22■□□□□ 0.83
SHKBP1-203ENST00000594298 COL4A4P53420 1690 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-203ENST00000594298 FIBPO43427 364 aa20.21■□□□□ 0.83
SHKBP1-203ENST00000594298 EIF5BO60841 1220 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-203ENST00000594298 SEMA3FQ13275 785 aa20.21■□□□□ 0.83
SHKBP1-203ENST00000594298 TSGA10IPQ3SY00 556 aa20.21■□□□□ 0.83
SHKBP1-203ENST00000594298 SP7Q8TDD2 431 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-203ENST00000594298 TMEM87BQ96K49 555 aa20.21■□□□□ 0.83
SHKBP1-203ENST00000594298 GPR20Q99678 358 aa20.21■□□□□ 0.83
SHKBP1-203ENST00000594298 RNPEPQ9H4A4 650 aa20.21■□□□□ 0.83
SHKBP1-203ENST00000594298 MTUS1Q9ULD2 1270 aa20.21■□□□□ 0.83
SHKBP1-203ENST00000594298 PIK3CDO00329 1044 aa20.2■□□□□ 0.82
SHKBP1-203ENST00000594298 TREHO43280 583 aa20.2■□□□□ 0.82
SHKBP1-203ENST00000594298 PRC1O43663 620 aa20.2■□□□□ 0.82
SHKBP1-203ENST00000594298 GNAT1P11488 350 aa20.2■□□□□ 0.82
SHKBP1-203ENST00000594298 SMARCA1P28370 1054 aa20.2■□□□□ 0.82
SHKBP1-203ENST00000594298 ANTXR2P58335 489 aa20.2■□□□□ 0.82
SHKBP1-203ENST00000594298 FAM117BQ6P1L5 589 aa20.2■□□□□ 0.82
SHKBP1-203ENST00000594298 XRRA1Q6P2D8 792 aa20.2■□□□□ 0.82
SHKBP1-203ENST00000594298 SENP7Q9BQF6 1050 aa20.2■□□□□ 0.82
SHKBP1-203ENST00000594298 SPZ1Q9BXG8 430 aa20.2■□□□□ 0.82
SHKBP1-203ENST00000594298 PCNX4Q63HM2 1172 aa20.19■□□□□ 0.82
SHKBP1-203ENST00000594298 CYFIP1Q7L576 1253 aa20.19■□□□□ 0.82
SHKBP1-203ENST00000594298 MYOCDQ8IZQ8 938 aa20.19■□□□□ 0.82
SHKBP1-203ENST00000594298 SEPT8Q92599 483 aa20.19■□□□□ 0.82
SHKBP1-203ENST00000594298 NEK1Q96PY6 1258 aa20.19■□□□□ 0.82
SHKBP1-203ENST00000594298 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 DDAH1O94760 285 aa20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 HMGB1P09429 215 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 ADAM17P78536 824 aa20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 FBXO22Q8NEZ5 403 aa20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 CTCFLQ8NI51 663 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 TOP1MTQ969P6 601 aa20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 RRP36Q96EU6 259 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 C17orf80Q9BSJ5 609 aa20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 RTEL1Q9NZ71 1219 aa20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 ZNF215Q9UL58 517 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-203ENST00000594298 RBAK-RBAKDNI3L0D1 243 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 MEIS2O14770 477 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 KIF5BP33176 963 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 FAM26DQ5JW98 314 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 NFXL1Q6ZNB6 911 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 ZNF654Q8IZM8 581 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 SMARCC2Q8TAQ2 1214 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 CUL5Q93034 780 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 SAMD11Q96NU1 681 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 LZTS2Q9BRK4 669 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 LY9Q9HBG7 655 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 SETD4Q9NVD3 440 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 RAPGEFL1Q9UHV5 662 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 MYH7BA7E2Y1 1941 aa20.17■□□□□ 0.82
SHKBP1-203ENST00000594298 COL4A6Q14031 1691 aa20.16■□□□□ 0.82
SHKBP1-203ENST00000594298 TCF20Q9UGU0 1960 aaKnown RBP20.16■□□□□ 0.82
SHKBP1-203ENST00000594298 CCDC69A6NI79 296 aa20.16■□□□□ 0.82
SHKBP1-203ENST00000594298 HSPA4P34932 840 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms