RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 F5H6K3 240 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 KLRC3Q07444 240 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 SEMA3FQ13275 785 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 SPA17Q15506 151 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 FKBP15Q5T1M5 1219 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 CNKSR1Q969H4 720 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 ERGIC2Q96RQ1 377 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 CSRNP1Q96S65 589 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 C7orf25Q9BPX7 421 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 SEMA6BQ9H3T3 888 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 BLOC1S4Q9NUP1 217 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 CAPN6Q9Y6Q1 641 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 SCN9AQ15858 1988 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 EPHB6O15197 1021 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 RRP1BQ14684 758 aaKnown RBP13.86□□□□□ -0.19
RNF4-222ENST00000541204 SLC15A2Q16348 729 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 ECM1Q16610 540 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 KRT79Q5XKE5 535 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.86□□□□□ -0.19
RNF4-222ENST00000541204 MAGEF1Q9HAY2 307 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 FAM207AQ9NSI2 230 aaPredicted RBP13.86□□□□□ -0.19
RNF4-222ENST00000541204 SCAF8Q9UPN6 1271 aaKnown RBP13.86□□□□□ -0.19
RNF4-222ENST00000541204 NRXN2Q9P2S2 1712 aa13.86□□□□□ -0.19
RNF4-222ENST00000541204 A0A1W2PQJ5 194 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 AMPD3Q01432 767 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 LRRC41Q15345 812 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 LARP4BQ92615 738 aaKnown RBP13.85□□□□□ -0.19
RNF4-222ENST00000541204 HAS1Q92839 578 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 CRACR2AQ9BSW2 395 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 IDI2Q9BXS1 227 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 MLXIPQ9HAP2 919 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 ARHGAP20Q9P2F6 1191 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.85□□□□□ -0.19
RNF4-222ENST00000541204 RSPH14Q9UHP6 348 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 ZBTB12Q9Y330 459 aaPredicted RBP13.85□□□□□ -0.19
RNF4-222ENST00000541204 FOCADQ5VW36 1801 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 MRPS25P82663 173 aaKnown RBP13.85□□□□□ -0.19
RNF4-222ENST00000541204 CREG2Q8IUH2 290 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 GLIS3Q8NEA6 775 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 HDAC7Q8WUI4 952 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 PSMB7Q99436 277 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 IFIH1Q9BYX4 1025 aaKnown RBP13.85□□□□□ -0.19
RNF4-222ENST00000541204 SERPINA10Q9UK55 444 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 SNX12Q9UMY4 172 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 MYO3BQ8WXR4 1341 aa13.85□□□□□ -0.19
RNF4-222ENST00000541204 AGPSO00116 658 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 MOCS3O95396 460 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 STAT3P40763 770 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 CLK2P49760 499 aaKnown RBP13.84□□□□□ -0.19
RNF4-222ENST00000541204 FXR2P51116 673 aaKnown RBP eCLIP13.84□□□□□ -0.19
RNF4-222ENST00000541204 CDK17Q00537 523 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 CACNB1Q02641 598 aaPredicted RBP13.84□□□□□ -0.19
RNF4-222ENST00000541204 FIGNQ5HY92 759 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 CNNM4Q6P4Q7 775 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 C7orf43Q8WVR3 580 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 TSGA10Q9BZW7 698 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 TBC1D7Q9P0N9 293 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 PCDHA12Q9UN75 941 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 PLAGL2Q9UPG8 496 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 JRKLQ9Y4A0 524 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 PCDHA13Q9Y5I0 950 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 NDUFB10O96000 172 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 SKIDA1Q1XH10 827 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 TRIM58Q8NG06 486 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 RAB34Q9BZG1 259 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 SH2D4AQ9H788 454 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 MMRN2Q9H8L6 949 aa13.84□□□□□ -0.19
RNF4-222ENST00000541204 ZNF277Q9NRM2 450 aaPredicted RBP13.84□□□□□ -0.19
RNF4-222ENST00000541204 USO1O60763 962 aaKnown RBP13.83□□□□□ -0.19
RNF4-222ENST00000541204 HOXA13P31271 388 aaPredicted RBP13.83□□□□□ -0.19
RNF4-222ENST00000541204 CXCR5P32302 372 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 ECE1P42892 770 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 MATR3P43243 847 aaKnown RBP eCLIP13.83□□□□□ -0.19
RNF4-222ENST00000541204 KIF11P52732 1056 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 ZYXQ15942 572 aaKnown RBP13.83□□□□□ -0.19
RNF4-222ENST00000541204 VWA3BQ502W6 1294 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 IQCEQ6IPM2 695 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 TMEM179Q6ZVK1 233 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 LRRC1Q9BTT6 524 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 NDST4Q9H3R1 872 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 DEF6Q9H4E7 631 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 STK32BQ9NY57 414 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 SMARCAL1Q9NZC9 954 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 NYAP2Q9P242 653 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 SIK3Q9Y2K2 1263 aa13.83□□□□□ -0.19
RNF4-222ENST00000541204 A0A1W2PRG0 241 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 ANKRD65E5RJM6 399 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 TACC1O75410 805 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 EIF4A3P38919 411 aaKnown RBP13.83□□□□□ -0.2
RNF4-222ENST00000541204 RBM26Q5T8P6 1007 aaKnown RBP13.83□□□□□ -0.2
RNF4-222ENST00000541204 CENPPQ6IPU0 288 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 PPP1R18Q6NYC8 613 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 TATDN1Q6P1N9 297 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 CDAN1Q8IWY9 1227 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 DDX12PQ92771 950 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 P2RX7Q99572 595 aaKnown RBP13.83□□□□□ -0.2
RNF4-222ENST00000541204 E9PMD0 336 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 SLC7A5Q01650 507 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 PRR16Q569H4 304 aa13.83□□□□□ -0.2
RNF4-222ENST00000541204 NFRKBQ6P4R8 1299 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms